Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  225 bits (574), Expect = 3e-63
 Identities = 138/362 (38%), Positives = 209/362 (57%), Gaps = 3/362 (0%)

Query: 202 AQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQG--DLSVKADA 259
           A+ ++ V + + I +   L++++L + L++  IV P+ +  + M  +A G  DL+   D 
Sbjct: 184 AEFSSQVWKASFIGLAIALVMALLVS-LIARSIVRPLQAAVNAMGNIASGESDLTRSLDT 242

Query: 260 DGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIE 319
            G++E+ +LS+  N+   +L   V QL   +  +  +S EL +  TQA   +Q +  ++E
Sbjct: 243 HGQDEVTQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELGSNATQAHDRSQQQSQQME 302

Query: 320 QVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAAR 379
            VA+A+NE+     +V+ NA  A +  R+A   A+ G      S Q  +Q++  ++ A  
Sbjct: 303 LVATAINEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQIDQLSGTISQAVE 362

Query: 380 VVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAAR 439
           V+  L  +S QI +V+EVIR ++DQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA R
Sbjct: 363 VIRTLSAESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQR 422

Query: 440 TQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDS 499
           TQ ST EIQ +IE LQ  S  A   +  S            +A  +L  I ES+ ++N  
Sbjct: 423 TQKSTAEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASLTAIGESLRNLNGL 482

Query: 500 NAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFF 559
           NA +A+A  QQ+HV +DIN+NV+  + L H       QS+ AS  L  L+E+    L  F
Sbjct: 483 NASIASATLQQAHVVEDINQNVTEAAGLSHSTALAAEQSSVASAHLRGLSEQLDGLLRQF 542

Query: 560 KL 561
           K+
Sbjct: 543 KV 544



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 72/366 (19%), Positives = 154/366 (42%), Gaps = 38/366 (10%)

Query: 42  IALVIALWITKV--NLTHEQQA-------IADNTHALVRYKDTIAQIDDTIYPLRISAVY 92
           IALV+AL ++ +  ++    QA       IA     L R  DT  Q + T    ++S  +
Sbjct: 200 IALVMALLVSLIARSIVRPLQAAVNAMGNIASGESDLTRSLDTHGQDEVT----QLSRHF 255

Query: 93  AIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALF 152
                   N+F A+LR+ + ++Q   +++ Q +Q         Q+ +    +SQ+M  + 
Sbjct: 256 --------NSFTAKLRQVVGQLQVCANALGQSSQELGS--NATQAHDRSQQQSQQMELVA 305

Query: 153 NRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNA 212
             ++       E    +Q   +      S + D +Q        +++ S Q   +   + 
Sbjct: 306 TAIN-------EVTYGVQDVAKNAEHAASEMRD-AQAQAQQGQVNIDSSLQQ--IDQLSG 355

Query: 213 MITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADGE--NEIAKLSQ 270
            I+    ++ ++ A     G ++  I S+      LA  + +++A   GE     A ++ 
Sbjct: 356 TISQAVEVIRTLSAESTQIGSVLEVIRSIADQTNLLAL-NAAIEAARAGEQGRGFAVVAD 414

Query: 271 DVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELAS 330
           +V     +   +  ++  + E +   S     V++ + S +QM + +  Q  +++  +  
Sbjct: 415 EVRLLAQRTQKSTAEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASLTAIGE 474

Query: 331 TADNVSD-NASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKEQSE 389
           +  N++  NAS A AT ++A  +      +  E++  S   ALA   ++     L+  SE
Sbjct: 475 SLRNLNGLNASIASATLQQAHVVEDINQNV-TEAAGLSHSTALAAEQSSVASAHLRGLSE 533

Query: 390 QISNVI 395
           Q+  ++
Sbjct: 534 QLDGLL 539