Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  234 bits (596), Expect = 8e-66
 Identities = 158/471 (33%), Positives = 256/471 (54%), Gaps = 11/471 (2%)

Query: 86  LRISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAES 145
           LRI A+       R    +A+  + LTE+++ L       Q    +P  +   + + AE 
Sbjct: 63  LRIRALTLRLLVNRDPQALAQNEQKLTEIKANLHRARTLYQGLIVLPAEQVLFDRFKAEE 122

Query: 146 QKMVALFNRLDQGLATREEANVFIQSFRETGNRMISAINDLSQKVNHYAT---TSMEQSA 202
            + +    R +Q + T  +AN    + R     M    ++++  +    T   TS  Q+A
Sbjct: 123 ARYL---ERQEQ-VVTLSKANQLEDAIRVVNGEMNQLADEMAATLRELVTLNKTSANQAA 178

Query: 203 QSNAVVMRNAMITVLSVLMLSVLA----AWLLSGQIVAPINSLQSVMRKLAQGDLSVKAD 258
                V   + I V+ +++L+ L     A LL+  IV P+     V + +A GDL+ +  
Sbjct: 179 SLAQSVFSQSRIWVIGMIVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVASGDLTGEIS 238

Query: 259 ADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEI 318
             G +E A+L Q + +    L  T+ +++  S ++ASAS EL+ V   A      +  EI
Sbjct: 239 VCGRDEPARLQQALKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEI 298

Query: 319 EQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAA 378
           EQ A+AVN++ +  + V+ NA +    +RE+D +A+ G    +++  + E +A  + D  
Sbjct: 299 EQAATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNV 358

Query: 379 RVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAA 438
             V  L ++   IS V++VIR +++QTNLLALNAAIEAARAG++GRGFAVVADEVR LA 
Sbjct: 359 TQVEDLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAH 418

Query: 439 RTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDIND 498
           RTQ ST+EI+ +I  +Q  +  A  SMQ S         +   A  AL  I  + + IN+
Sbjct: 419 RTQQSTQEIEQMISGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINE 478

Query: 499 SNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLA 549
            N  +A+A+EQQ+ V ++++RN+ N+  L HQ  TG +Q+++AS++LS LA
Sbjct: 479 RNLVIASASEQQAAVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLA 529



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 49/300 (16%), Positives = 125/300 (41%), Gaps = 32/300 (10%)

Query: 108 REGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALFNRLDQGLATREEANV 167
           R+    +Q AL S++++ + +  +  + +S     + S+++  +     +GL  + +   
Sbjct: 242 RDEPARLQQALKSMQENLRDT--IRRISESSNQLASASEELSCVTEDATRGLHQQSQE-- 297

Query: 168 FIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAA 227
            I+      N+M +A+ +++      A  + + S +S+ +  R       +V+ +  LA 
Sbjct: 298 -IEQAATAVNQMTAAVEEVASN----AVATSQASRESDRIAQRGREQVQQTVVSIEALAT 352

Query: 228 WLLSG--------QIVAPINSLQSVMRKLAQGDLSVKADA--------DGENEIAKLSQD 271
            +           Q V  I+ +  V+R +A+    +  +A        D     A ++ +
Sbjct: 353 DVTDNVTQVEDLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADE 412

Query: 272 VNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMEL-------MEIEQVASA 324
           V     +   + +++ ++   +   + +  + M Q+ + A+  L         +E++ASA
Sbjct: 413 VRALAHRTQQSTQEIEQMISGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASA 472

Query: 325 VNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRL 384
              +      ++  +    A ARE D    +   +  ++S  + Q + A +D +R+ + L
Sbjct: 473 FTLINERNLVIASASEQQAAVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLAVDL 532