Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  228 bits (582), Expect = 4e-64
 Identities = 158/507 (31%), Positives = 274/507 (54%), Gaps = 24/507 (4%)

Query: 69  LVRYKDTIAQIDDTIYPLRISAVYAIYDAER-------RNNFIAELREGLTEVQSALSS- 120
           LV   +T A ++  +   R   +Y + DA +       R+    ++ + L   Q++ ++ 
Sbjct: 44  LVSVSNTAATLNGLVAHNR--GLYRLMDASKGDVSPQDRDRVRQDIAQELKRSQASYATY 101

Query: 121 ----IEQDAQFSRDVPVVKQSIEIYVAESQKMVALFN--RLDQGLATREEANVFIQSFRE 174
               +E D + + D   + Q    Y++ S++++AL +  ++DQ  A    +N   + FR+
Sbjct: 102 RATPLEDDERAAGDK--LDQIWPTYISSSERIMALLDGGQVDQARAQLNTSNN--ELFRQ 157

Query: 175 TGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQI 234
               +   I   ++++   A  + E    +   ++   ++  L  +++ VL   L++  I
Sbjct: 158 ARELIRVMIESNNRQIKEGAVAADELRNSALTWMISGIVLAFLIAIIIGVLITRLITRPI 217

Query: 235 VAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVA 294
              + S Q    ++AQGDL+     +  +E  +L   ++     L +T+ ++   S+++A
Sbjct: 218 AQAVQSAQ----RIAQGDLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLA 273

Query: 295 SASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELAK 354
           SA+ EL+AV  ++      +  EI+Q A+AVN++ +  D V+ NA S    +R+A   A+
Sbjct: 274 SAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAE 333

Query: 355 SGLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAI 414
            G    +++      M + +ND+ + V  L  Q  +I  VI+VIRG++DQTNLLALNAAI
Sbjct: 334 DGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAI 393

Query: 415 EAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQ 474
           EAARAGE GRGFAVVADEVR LA RTQ ST +I+ +I ++QT +  A  +M  SL     
Sbjct: 394 EAARAGEQGRGFAVVADEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANN 453

Query: 475 NKALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTG 534
            + L   A +AL  IT SV+ IN+ N  +A+A+E+Q+ V ++++RN+ N+  L  Q   G
Sbjct: 454 TQTLAQNAGEALQRITASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAG 513

Query: 535 ISQSASASNELSHLAEKQKAQLSFFKL 561
             Q+ ++S +LS LA      +S F+L
Sbjct: 514 AHQTNASSQDLSRLATSFNVLVSKFQL 540