Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

 Score =  221 bits (564), Expect = 4e-62
 Identities = 161/568 (28%), Positives = 286/568 (50%), Gaps = 52/568 (9%)

Query: 24  LKNLSIRLQVLLPVLFTMIALVIALWITKVNLTHEQQAIADNTHALVRYKDTIAQIDDTI 83
           +   S++  + + V    IAL+   + T +N     QA +++ +A            +T 
Sbjct: 3   INKFSLKWMLAIAVAIPAIALLFVAF-TSLNTMSVMQAQSNSLYA------------NTA 49

Query: 84  YPLRISAVYAIYDAERRNNFIAELRE--GLTEVQSALSSIEQDAQFSRDVPVVKQSIEIY 141
            P+R  A         R      L +   L + +  L  +E+    + D+P ++Q++++ 
Sbjct: 50  APMRAMAEATSRIPRMRVGIDMMLLQETALKDAKGVLKRVEEAR--TEDIPEMRQAMQVA 107

Query: 142 V---------AESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMISAIN-------- 184
           V          +++K+ A F ++      REE    +Q+F    N M +A N        
Sbjct: 108 VDSQVNPELKEQARKLQARFEQM-----VREELEPMLQAF--ANNDMTTAQNIYRDKYAP 160

Query: 185 ---DLSQKVNHYATTSMEQSAQSNAVVMRN-------AMITVLSVLMLSVLAAWLLSGQI 234
              ++ ++ N    T ++Q+ Q N   + +        M+ + + L++S + + ++   +
Sbjct: 161 TYGEMRKQANQILDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNL 220

Query: 235 VAPINSLQSVMRKLAQG-DLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEV 293
            + +  L+  M   A    L  + + DG +E+  + +  N  + +++ ++E++   S+E+
Sbjct: 221 RSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKEL 280

Query: 294 ASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNASSADATAREADELA 353
           A+ ++ ++      +SN   +     QVA+A++EL +T   ++ NA+ A   A++A   +
Sbjct: 281 ATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHS 340

Query: 354 KSGLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAA 413
             G  +  E     + +   L++A +VV  L  Q   IS+ ++ IR +S+QTNLLALNAA
Sbjct: 341 GEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAA 400

Query: 414 IEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLT 473
           IEAARAGE GRGFAVVADEVR LA+R+ AST+EIQ +I  LQT+ST A ++M+       
Sbjct: 401 IEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSD 460

Query: 474 QNKALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVT 533
                +AKAN +L  I   +  IND N QVATA E+QS V +DINRNV +++ L  +   
Sbjct: 461 VVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSH 520

Query: 534 GISQSASASNELSHLAEKQKAQLSFFKL 561
              + + AS  L  L+ +    +  F+L
Sbjct: 521 VADELSRASASLQRLSSQLDKLVGSFEL 548