Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  219 bits (559), Expect = 2e-61
 Identities = 130/352 (36%), Positives = 211/352 (59%), Gaps = 2/352 (0%)

Query: 212 AMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLA--QGDLSVKADADGENEIAKLS 269
           +++  L   +  +L  WL +  +  PI ++ + +  +A  +GDL+ + D   ++E+ +L+
Sbjct: 337 SLLIGLGTAIAGLLLVWLTARGVTRPILAVAARLEDIASGEGDLTRRLDYAHQDELGQLT 396

Query: 270 QDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELA 329
              N  + +L   + Q+    +E  + + + AA+ +Q     Q +  EIEQVA+A NE++
Sbjct: 397 GWFNRFLDKLQPVIAQVKGSLQEARNTADQSAAIASQTSDGMQQQHREIEQVATAANEMS 456

Query: 330 STADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKEQSE 389
           +TA +V+ NAS A   AR AD+ ++ GL +   + Q  +++A  +N A      L+++S 
Sbjct: 457 ATALDVAHNASQAAQAARAADQASQEGLQLVDSTRQGIDRLAAGMNTAMDEARALEDRSG 516

Query: 390 QISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQA 449
           QI +V+EVIR +++QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RTQ S +EI+ 
Sbjct: 517 QIGSVLEVIRTIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQVSVEEIRQ 576

Query: 450 IIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVATAAEQ 509
           +IE LQ  +     +M         + A   +A  AL  I E+V+ I+D N Q+A+AAE+
Sbjct: 577 VIEGLQQGTQDVVGAMHAGQRQAQDSAARMEQALPALQRIGEAVAVISDMNLQIASAAEE 636

Query: 510 QSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQKAQLSFFKL 561
           QS V +++NRNV+ +  +         +SA  S  L+ LA +Q+A +  F++
Sbjct: 637 QSAVAEEVNRNVAGIRDVTESLAGQADESARISQALNRLANQQQALMEQFRV 688



 Score = 42.4 bits (98), Expect = 6e-08
 Identities = 74/392 (18%), Positives = 152/392 (38%), Gaps = 36/392 (9%)

Query: 18  LSMPFSLKNLSIRLQVLLPVLFTMIALVIALWITKVNLTHEQQAIADNTHALVRYKDTIA 77
           L+      N +  L  LL  L T IA ++ +W+T   +T    A+A     +   +  + 
Sbjct: 322 LNQRLDAHNQNANLTSLLIGLGTAIAGLLLVWLTARGVTRPILAVAARLEDIASGEGDLT 381

Query: 78  QIDDTIYPLRISAVYAIYDAERRNNFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQS 137
           +  D  +   +  +   +     N F+ +L+  + +V+ +L    Q+A+ + D     QS
Sbjct: 382 RRLDYAHQDELGQLTGWF-----NRFLDKLQPVIAQVKGSL----QEARNTAD-----QS 427

Query: 138 IEIYVAESQKMVALFNRLDQGLATREEANVFIQSFRETGNRMISAIN--DLSQKVNHYAT 195
             I    S  M      ++Q      E +          ++   A    D + +      
Sbjct: 428 AAIASQTSDGMQQQHREIEQVATAANEMSATALDVAHNASQAAQAARAADQASQEGLQLV 487

Query: 196 TSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRK--LAQGDL 253
            S  Q     A  M  AM            A    SGQI + +  ++++  +  L   + 
Sbjct: 488 DSTRQGIDRLAAGMNTAMD--------EARALEDRSGQIGSVLEVIRTIAEQTNLLALNA 539

Query: 254 SVKADADGE--NEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNA 311
           +++A   GE     A ++ +V     +   +VE++ ++ E +   + ++   M   +  A
Sbjct: 540 AIEAARAGEAGRGFAVVADEVRGLAQRTQVSVEEIRQVIEGLQQGTQDVVGAMHAGQRQA 599

Query: 312 QMELMEIEQVASAVNELASTADNVSDN----ASSADATAREADELAKSGLAIFKESSQAS 367
           Q     +EQ   A+  +      +SD     AS+A+  +  A+E+ ++   I       +
Sbjct: 600 QDSAARMEQALPALQRIGEAVAVISDMNLQIASAAEEQSAVAEEVNRNVAGI----RDVT 655

Query: 368 EQMALALNDAARVVLRLKEQSEQISNVIEVIR 399
           E +A   +++AR+   L   + Q   ++E  R
Sbjct: 656 ESLAGQADESARISQALNRLANQQQALMEQFR 687