Pairwise Alignments

Query, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25

 Score =  241 bits (615), Expect = 7e-68
 Identities = 139/369 (37%), Positives = 229/369 (62%), Gaps = 3/369 (0%)

Query: 195 TTSMEQSAQSNAVVMRNAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQG--D 252
           T   +  AQ  A ++  A+  +L +  + +L  WL+   I  P+  + +++  +AQG  D
Sbjct: 345 TLQSDLDAQRKADIVGMAIAGLL-IAGIGLLVIWLVGHGIARPLKQMVAMLNDIAQGEGD 403

Query: 253 LSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQ 312
           L+ +  +D  +E+  ++   NT + +L   + Q+    ++V+ +S   A +  +      
Sbjct: 404 LTRRLTSDRADELGAIANGFNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVH 463

Query: 313 MELMEIEQVASAVNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMAL 372
            +++EI+QVA+AV+E+ +TA +V+ NA+ A   A  AD+ A  G+ I +++S +   +A 
Sbjct: 464 KQMVEIDQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAE 523

Query: 373 ALNDAARVVLRLKEQSEQISNVIEVIRGVSDQTNLLALNAAIEAARAGESGRGFAVVADE 432
            +  A  VV  L + SE I+ ++  IRG+++QTNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 524 EIGKAVGVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 583

Query: 433 VRMLAARTQASTKEIQAIIEELQTQSTMANDSMQTSLDMLTQNKALTAKANDALIGITES 492
           VR LA +TQ +T+EIQA+I++LQ  +      M+ S     ++    AKA +AL  I+++
Sbjct: 584 VRNLAQKTQKATEEIQAMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETISQA 643

Query: 493 VSDINDSNAQVATAAEQQSHVTQDINRNVSNMSTLVHQNVTGISQSASASNELSHLAEKQ 552
           VS IND N Q+A+AAE+QS V +DINRNV N+  + ++   G  +S++AS +L+ LAE+Q
Sbjct: 644 VSVINDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQ 703

Query: 553 KAQLSFFKL 561
           +  ++ FK+
Sbjct: 704 RRLINQFKV 712



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 57/291 (19%), Positives = 120/291 (41%), Gaps = 22/291 (7%)

Query: 101 NNFIAELREGLTEVQSALSSIEQDAQFSRDVP------VVKQSIEI--YVAESQKMVALF 152
           N F+ +L+  +T+V S++  +   ++ + D+       V KQ +EI        +M A  
Sbjct: 424 NTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATA 483

Query: 153 NRLDQGLATREEANVFIQSFRETGNRMI----SAINDLSQKVNH---YATTSMEQSAQSN 205
             + +      +A          G R++    ++I  L++++        T  + S   N
Sbjct: 484 QDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVGVVQTLAKDSENIN 543

Query: 206 AVVMR-NAMITVLSVLMLSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADGENE 264
           A++     +    ++L L+       +G+       +   +R LAQ   + KA  + +  
Sbjct: 544 AILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQ--KTQKATEEIQAM 601

Query: 265 IAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASA 324
           I +L Q     V  +    +  +R  E V  A+    A+ T +++ + +  M   Q+ASA
Sbjct: 602 IQQLQQGTRDVVRVM---EDSQSRTDESVQHAAKAAEALETISQAVSVINDMN-TQIASA 657

Query: 325 VNELASTADNVSDNASSADATAREADELAKSGLAIFKESSQASEQMALALN 375
             E ++ A++++ N  +    A E    A    A   + ++ +EQ    +N
Sbjct: 658 AEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLIN 708



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 454 LQTQSTMANDSMQTS---LDMLTQNKALTAKANDALIGITESVSDINDSNAQVATAAEQQ 510
           +Q   T A+ ++      L +++ N  L A   DA   + E  SD+ D+N Q   A  + 
Sbjct: 241 IQDMLTSADQNLYNGAGELALISSNGRLVAYTKDAS-KLGEKSSDLLDTNEQANLAQLKA 299

Query: 511 SHVTQDINRNVSNMSTLVHQNV 532
             V  DI+R   ++   +  N+
Sbjct: 300 GEVRYDIDREHGHIELFLPFNI 321