Pairwise Alignments

Query, 396 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 754 a.a., diguanylate phosphodiesterase from Pseudomonas simiae WCS417

 Score =  119 bits (297), Expect = 4e-31
 Identities = 96/340 (28%), Positives = 155/340 (45%), Gaps = 31/340 (9%)

Query: 34  GVATAIFLGFALYYYFNHQPLSSGLLLLS-GIVTLLNMISLNRHRELHTQADLILSLILL 92
           G+A   ++G +           SGL L S GI    ++ +L     L T   +   L  L
Sbjct: 136 GIALMHYVGMSAMRSQAQMYFDSGLFLASVGIAMGASLAALLLSSYLRTGTGVFHQL--L 193

Query: 93  TYALALVSNAQHELSHLLWLYPLITTLVMINPFRLGLVYSAAICLAMTASILFNPAQTGS 152
            YA +LV  A     H   +  L          +L +   A + LA+      NP Q G 
Sbjct: 194 KYAASLVLGAGILSMHFTGMAAL----------QLIVPTGADLSLAVDN----NPIQLGL 239

Query: 153 YPIAQTYFLVSLFTLTIICNTASFFFSKAINYIHTLYQE------GIEELAYLDPLTGLA 206
                T  ++       + +       + +  ++ L  E       ++++A+ D LT L 
Sbjct: 240 SVAVITLLVIGSSISAALADKKLQHKERDLRRVNALLSELDQARASLQQVAHYDALTSLL 299

Query: 207 NRWSFETWATEKLKEQQSSNTITALVFLDIDNFKRINDSYGHDVGDQVLKHFAHRLRNNI 266
           NR  F     EKL E+ +SN + A++FLDID+FKRINDS GHD GDQ+L   A  ++ ++
Sbjct: 300 NRRGFNQIFAEKLAEKTASNGMMAVIFLDIDHFKRINDSLGHDAGDQLLSVLAGHIKGSV 359

Query: 267 RNKDRATNQHDYSIARFAGDEFVLLLYGVRNLRDLDNILNRICNLFVDRYPETDMLNNLT 326
           R+       H   +ARF GDEF +L+  + +  +  ++  RI     +          +T
Sbjct: 360 RS-------HADVVARFGGDEFCILI-SIHHRDEARHLAQRIMQQMKEPIELAGRRMVMT 411

Query: 327 VSIGAAIYPKDAITLPELTRCADKAMYAAKHGGKNQYRYY 366
            SIG +++P D +T  EL + AD A+Y +K  G+N   ++
Sbjct: 412 TSIGISLFPDDGLTCEELLKTADLALYQSKDAGRNNLNFF 451