Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

 Score =  107 bits (268), Expect = 3e-28
 Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 14/300 (4%)

Query: 5   APLKSLYSFVAVAETGSMTLAADALNVSHSAISQAIKSLELQLGQPLFHRVGRQVVLNSA 64
           APL  L +F A   TG+  LAA  L +S SAIS AI+ LE  L   LF R  R++ L   
Sbjct: 7   APLNLLRAFEAAGRTGAFALAASELELSPSAISHAIRKLENLLDVRLFQRSTREITLTKE 66

Query: 65  GKRYYQKVAPALEQIVEATESLLKPMHSNRITLNMINSLALHWWIPRFSSFQAFAPDVDV 124
           G+   + +     ++ +   +L+    S  + L+   S A  W +PR   F    P +D+
Sbjct: 67  GEILLEHIQRGFNELQQGL-ALVTADESRPLRLHTAPSFAHQWLLPRLGKFIRENPSIDL 125

Query: 125 RISTLTGAFSLEEQGVDVALIHGQWREWQDYYCEQLADDELVMVISQNMISANMPLKQAL 184
           R+S  T     E+   D+ +++G+ R    Y    LA +EL  + S  +      LK+  
Sbjct: 126 RLSASTEYARFEQDDFDLDIVYGEPRP-SPYEKIPLAVEELTPLCSPQLAER---LKKPE 181

Query: 185 AQFPAIFVNNPRRQTDWDIWCQANQVTPPPQQRNLSFSASAQALQATLSGLGVFVTHKLF 244
             +    +    +   W  W +AN++T PP    L F  S  A+ A + GLGV +  KL 
Sbjct: 182 DLYALTLIQCDVQLYQWKGWFEANKMT-PPNNYGLRFDRSFMAIAAAVDGLGVVLESKLL 240

Query: 245 IKQELESGILKEIGQPVTHPDQ-----GYYFACRPEALRSEAVLTLRSWLRNEFQKNQNR 299
            ++E+ SG   ++  P+ +        G+Y           A+   ++WL NE    + R
Sbjct: 241 AEREIASG---KLVCPLVNSTSEIHYIGHYLVFPQHQHMHSALDVFKTWLLNELNLGKIR 297