Pairwise Alignments

Query, 339 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  114 bits (286), Expect = 3e-30
 Identities = 71/178 (39%), Positives = 100/178 (56%), Gaps = 15/178 (8%)

Query: 165 EISRLKEQLAKVQKDALFDSLSGLYNRRAF-----DGDMFTLIHAGQQVSLIMLDIDHFK 219
           E  RL+EQL   +  A  D+++GL NRR F      G M  L  A Q  SL+++D D FK
Sbjct: 241 EQKRLEEQL---EHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIA-QDYSLLLIDTDRFK 296

Query: 220 ALNDNYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVR 279
            +ND YGH  GD+++ A+A+ L+S  R G   +R+GGEEF L+ P   L  A   AE++R
Sbjct: 297 HINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR 356

Query: 280 RSIEKLTVKDRRSGQSVGSITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337
            S+ K+++        +   T S GV      +S++ L  R D  LY AKN GRNRV+
Sbjct: 357 VSVAKVSI------SGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVL 408