Pairwise Alignments

Query, 524 a.a., maltose ABC transporter permease MalF from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Inner membrane ABC transporter permease protein YcjO from Xanthobacter sp. DMC5

 Score =  108 bits (269), Expect = 4e-28
 Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 16/247 (6%)

Query: 267 VSIGTHNFERVWKDEGIKEPFINIFIWTVIFSVLTVIFTLMIGLVLASVVQWEALKGRAV 326
           V IG  N++ +W D        N  ++T+  S+L     L + L+L      E L  +A 
Sbjct: 64  VFIGLENYQSLWGDSLFWLVVFNTLLYTIAASILKFALGLWLALLLN-----ENLPFKAF 118

Query: 327 YRVLLILPYAVPAFISILIFRGLFNQSFGEINMVL--NGLFGLSPAWFSDPLLAKTMVLI 384
           +R +++LP+ VP  +S + F  +F+  +  I+  L   GL      +  D   A+  V+ 
Sbjct: 119 FRAVVLLPWVVPTVLSAIAFWWIFDSQYSIISWALIKMGLISAPINFLGDVTNARASVIA 178

Query: 385 VNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFIHNFTKITLPMMIKPLTPLLIASF 444
            N W G P++ I  +  L+ I   L+EA+ +DGA     F  ITLPM+   +  ++  S 
Sbjct: 179 ANVWRGIPFVAISLLAGLQTISPSLHEAATLDGATNWQRFRYITLPMLSPIIAVVMTFSV 238

Query: 445 AFNFNNFVMIQLLTQGGPNRIGTSEPAGYTDLLVSYTYRIAFEGTGGQDFGLASAIATLI 504
            F F +F +I +LT+GG        P   T L+ + +++ A  G G    G A A+A + 
Sbjct: 239 LFTFTDFQLIYVLTRGG--------PLNSTHLMATLSFQRAIPG-GSLGEGAAIAVAMIP 289

Query: 505 FLLVGAL 511
           FLL   L
Sbjct: 290 FLLAAIL 296



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 77  YIYPGIAGMILFILFPLAYTVGLAFTNYSAKNQ---LTLERAQSVLMDQTF 124
           ++ P    ++ F+ +PL   V L FT+     +   + LE  QS+  D  F
Sbjct: 30  FMVPAAVFLLFFLTYPLGLGVWLGFTDTRIGREGVFIGLENYQSLWGDSLF 80