Pairwise Alignments

Query, 524 a.a., maltose ABC transporter permease MalF from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., Inner membrane ABC transporter permease protein YcjO from Xanthobacter sp. DMC5

 Score =  126 bits (317), Expect = 9e-34
 Identities = 79/255 (30%), Positives = 129/255 (50%), Gaps = 16/255 (6%)

Query: 270 GTHNFERVWKDEGIKEPFINIFIWTVIFSVLTVIFTLMIGLVLASVVQWEALKGRAVYRV 329
           G  N+ R+          IN FI    +S  T+IF +++G+  A V+  +   GR + R 
Sbjct: 48  GLDNYTRMLSQWVFWRALINGFI----YSFGTIIFQVVLGIGFALVLN-QVFPGRNIVRG 102

Query: 330 LLILPYAVPAFISILIFRGLFNQSFGEINMVLNGLFGLSPAWFSDPLLAKTMVLIVNTWL 389
           L ILPY +P  + +L F+ + + S G +  +++ L      WF  P  A   V++V+ W+
Sbjct: 103 LSILPYLLPTVVVVLTFKWMVDGSIGVLTTMMSALGLPQVQWFESPGAAMASVILVSVWM 162

Query: 390 GFPYMMILCMGLLKAIPDDLYEASAIDGANFIHNFTKITLPMMIKPLTPLLIASFAFNFN 449
             P++    +  L+ +P  LYEA+ +DG N +  F  ITLPM+   LT +++    + FN
Sbjct: 163 WTPFVTTTFLAALQTVPSSLYEAAKVDGTNAVQRFFHITLPMLKPILTVIVLLRAVWMFN 222

Query: 450 NFVMIQLLTQGGPNRIGTSEPAGYTDLLVSYTYRIAFEGTGGQDFGLASAIATLIFLLVG 509
            F +I LLTQGG        P G T+ L   +Y+ AF   G  D G  +A+AT+ F ++ 
Sbjct: 223 KFDVIWLLTQGG--------PVGATEHLAILSYKQAF---GQFDIGGGAAVATISFAILS 271

Query: 510 ALALLNLRFTKLSQQ 524
            +  +  R   L  +
Sbjct: 272 LVVFIYFRLFPLDTE 286



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 69  SRKTYAHRYIYPGIAGMILFILFPLAYTVGLAF 101
           S K   + +++ G+A   L I+ P+ Y V L+F
Sbjct: 2   SSKATIYSFLFLGLAVTALLIVAPVVYAVSLSF 34