Pairwise Alignments

Query, 321 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  108 bits (269), Expect = 3e-28
 Identities = 89/296 (30%), Positives = 131/296 (44%), Gaps = 24/296 (8%)

Query: 30  SLHELVLNELGVYVFVKNRRGEYLYANPLTLKLFEADAQSLFGKTDHDFFHD-----DQL 84
           SL EL+ N L    +  +  G     N    ++F  D+    G+  H          DQ+
Sbjct: 190 SLVELLPNPL----WFTDPDGSLRLYNRAFREMFGVDSGDWHGQPTHGVLPQPLAGLDQM 245

Query: 85  SDIL----AADQQVFETRLSVIHEERAIAKSNGLVRIYRAVKHPILHRVTGEVIGLIGVS 140
           +D+           FE  L     +R +  + GLVR               E +G IG+ 
Sbjct: 246 ADMSLKVGGPGGLAFEASLDHQDGQRTLVVNKGLVR-------SDCRGTADEPMGTIGIV 298

Query: 141 TDITDIVELREQLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFK 200
           TDIT+   +  QL  LA TD LT   NRR  +        RA R    +S + IDID+FK
Sbjct: 299 TDITERKHMESQLRHLATTDELTGCLNRRAFFVAAEQELERASRYGNAVSVLMIDIDHFK 358

Query: 201 LINDQFGHDKGDEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIR 260
            +ND+ GH  GD+ L       ++ + +    GR+GGEEF  +L  T +  A  +AE++R
Sbjct: 359 QVNDRHGHAVGDKALKAATAAIRANLREIDSFGRLGGEEFAAMLPETTLAGALLVAERLR 418

Query: 261 Q--RFAEHPFFEQNEHIYLCA--GVSSLHHGDHDIADIYRRSDQALYKAKRNGRNR 312
           Q       P  +    + L    GV+    G+  +  +  R+D ALY+AK  GRNR
Sbjct: 419 QAVEAIALPLGDDQPPLRLTTSLGVAERQPGEVAVDQVLARADTALYRAKAEGRNR 474