Pairwise Alignments

Query, 263 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score = 85.9 bits (211), Expect = 8e-22
 Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 3/253 (1%)

Query: 11  SLSIEHPPS-DVFMNFEAFLSNTETREHSHPWGQVQLISGGILEMEAEDTRFLAPPHLAI 69
           S S   P S +  +    + S T    H+H  GQ    S G L+M  +   ++ PP  AI
Sbjct: 6   SFSPYEPDSPEAVVTLREYPSGTVFPRHTHRRGQFAYASTGALKMFTDLGNWVVPPQRAI 65

Query: 70  WVPAGIRHRSYNRKPIEYCS--LNIASQLTTAFPAKTSLIKVTSIVSAIIDDFRERNINV 127
           WVP GI H  + R  +   +  LN  +           +  V+ ++  +++       + 
Sbjct: 66  WVPGGISHEMHMRGDVVMLNTYLNDDAAQRAGLQDYCQVFGVSPLLRHLLEAALAIGPSA 125

Query: 128 AQSCEDKRLVQVLLDQLATRETQHHFLPSTNHKYLAPILAFVEENPTDNTTLQQWAEKVH 187
           + S  D+ ++ +L+D++          P  +   LA       E PT   ++ + A+   
Sbjct: 126 SPSVRDRCVLTLLIDEIGAMPELPLSAPLPSEARLARSCQRFLEAPTQKISICEMADWSS 185

Query: 188 TTERTLARHCQAELGMSFTEWRLRVRYLYSMELLRQGHAVKEVALTLGYNQASPFITMFK 247
            + RT  R+ +   GM+F  WR +V  L +   L  G ++ +VA  LG++ +S F ++F+
Sbjct: 186 MSRRTFTRNFRECTGMTFVSWRQQVCLLEATARLSHGSSITDVAFELGFSSSSAFTSVFR 245

Query: 248 KYSGLTPEQYKSR 260
           +  G +P +Y ++
Sbjct: 246 RNLGDSPARYLAK 258