Pairwise Alignments

Query, 311 a.a., DUF808 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  343 bits (881), Expect = 2e-99
 Identities = 186/305 (60%), Positives = 233/305 (76%), Gaps = 15/305 (4%)

Query: 1   MAGASLLTLLDDIATVLDDVALMSKMAAKKTAGVLGDDLALNAQQVSGVAAEREIPVVWA 60
           MAG+SLL L+DDIA VLDDVALM+KMAAKKTAGVLGDDLALNAQQVSGV AEREIPVVWA
Sbjct: 1   MAGSSLLVLIDDIAAVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWA 60

Query: 61  VAKGSFRNKLILVPAALIISSIAPWLIMPLLLIGGLFLCFEGAEKILEKWLHPEPKQNAE 120
           VAKGSF NKLILVP AL+IS+ APW + PLL++GG +LCFEG EK+  K+LH + + +AE
Sbjct: 61  VAKGSFVNKLILVPTALLISAFAPWAVTPLLMLGGAYLCFEGFEKLAHKFLHSKVEDHAE 120

Query: 121 --QRAAAIVNEGLETESLATESLAEYEKRKIGGAIRTDFILSAEIIVIALGTVQGHSMLT 178
             Q   A+ +  ++        L  +EK KI GAIRTDFILSAEII I LGTV    +  
Sbjct: 121 HAQLVKAVADPAID--------LVAFEKDKIKGAIRTDFILSAEIIAITLGTVADAPLTQ 172

Query: 179 QILVVSLIAVIMTIGVYGLVAGIVKLDDLGFYLQRQSKGQGLKASLGGVLVRFAPKLMKG 238
           Q++V+S IA++MT+GVYGLVAGIVKLDDLG +L  Q  GQ  + S+GG ++R AP +MK 
Sbjct: 173 QVIVLSGIAIVMTVGVYGLVAGIVKLDDLGLWL-TQKPGQAAR-SIGGAILRAAPYMMKS 230

Query: 239 LTVVGTAAMFLVGGGIVVHNVPAVHHILEPMLDVVHAWPVVGTLMPTLMNGVIGVVAGSL 298
           L+V+GTAAMFLVGGGI+ H +P VHH +E    V  +   V  L+PTL+NGV G++AG++
Sbjct: 231 LSVIGTAAMFLVGGGILTHGLPVVHHWIE---TVSQSAGGVAWLVPTLLNGVAGIIAGAV 287

Query: 299 LVAVM 303
           ++AV+
Sbjct: 288 VLAVV 292