Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rhodanobacter sp000427505 FW510-R12

 Score = 84.0 bits (206), Expect = 8e-21
 Identities = 101/400 (25%), Positives = 164/400 (41%), Gaps = 56/400 (14%)

Query: 2   QCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRE------LIAPATDVQWLPPVTSADTAF 55
           +C  F +  C+ C L     + Q+  K + L E       +APA+   WLPP+T+    +
Sbjct: 75  RCRHFAE--CSGCSLQHLDAAAQIEAKQRVLAENFERIGKVAPAS---WLPPLTAEPWGY 129

Query: 56  RNKAKMVVLGAAHAP--ILGIEDAQGQPL--SLVTCP-LYPQ--PMQELLAYLENWIRIA 108
           R K ++ V   A     ++G  + Q       +  C  ++P   P   LLA L   +   
Sbjct: 130 RRKGRLSVRNVAKKGRVLVGFREEQNPRFVTEIQQCEVMHPALGPKVGLLAELLGTMDAV 189

Query: 109 GIPPYNKLKKKGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVI 168
              P        +++F        +G  ++  V R    L   E +L  L  AF      
Sbjct: 190 NDVP--------QIEFA-------AGDDLMALVFRHMQPLS--EHDLAAL-TAFGQQHGF 231

Query: 169 SVNIQP-----VHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYA 223
           ++ +QP     VH    E     F   +      + DV +  +P  F Q N  + + + A
Sbjct: 232 AIYLQPGGTSSVHPLWPEHPRLAFRIASGDA--RYADVELEFQPLDFVQVNAGMNQLMMA 289

Query: 224 TARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNL 283
            A   +      ++ DLFCG+G F L  A     V G+E E   +  A ++A   GI N 
Sbjct: 290 RAMELLDPQPTDRVLDLFCGLGNFTLPIARRVAEVVGVEGEHGLVERAAQNAARNGIANA 349

Query: 284 SFAALDSAKFSQSQMSAP------ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQ 337
            F     A   + Q +A       + +L++PPR G   +L   L     + I+Y SC+P 
Sbjct: 350 CFHV---ANLFEDQRAADWAKQPWDKLLLDPPRAG-ADKLLDYLPHKQTRRIVYISCHPA 405

Query: 338 TMVKD---IAELSSYQMIRVQWFDMFPHTDHAEVLTLLVR 374
           ++ +D   + E   +++      DMFPHT H E + L  R
Sbjct: 406 SLARDAGILVERHGFRLAAAGVMDMFPHTSHVESIALFER 445