Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 16/176 (9%)

Query: 207 PKSFFQTNP---KVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTA-VTGIE 262
           P +F Q      +V     A      R++A     DLF GVG FAL  A  +TA V   E
Sbjct: 239 PAAFLQATAEGERVLADHVAAGMVGARKVA-----DLFAGVGTFALRLA--ETARVFAAE 291

Query: 263 IEPEAIASAQRSAQMMGIDNLSFAALDSAK--FSQSQMSAPELVLVNPPRRGLGSELTAQ 320
               A+A+  ++    G+  +   A D  +     ++++A + V+++PPR+G  ++    
Sbjct: 292 NHAGALAALLKAGHTPGLKGVDGEARDLFRRPLMAAELAAFDAVVIDPPRQGAEAQAREL 351

Query: 321 LEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRVQWFDMFPHTDHAEVLTLLVR 374
             +  P+ ++Y SCN  T  +D A L     ++  V   D F ++ H E++    R
Sbjct: 352 AVSRLPR-LVYVSCNAATFARDAALLVAGGMRLEGVVPVDQFRYSAHVELVATFSR 406