Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  116 bits (290), Expect = 1e-30
 Identities = 106/382 (27%), Positives = 165/382 (43%), Gaps = 51/382 (13%)

Query: 10  RCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQ---WLPPVTSADTAFRNKAKMVVLGA 66
           RC  C +   P+ EQ+  K + L E ++    V+   W  P++ A+  +R +A++ V   
Sbjct: 96  RCGGCSVQHLPHGEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGAEFGYRRRARVAVRWD 155

Query: 67  AHAPIL--GIEDAQGQPLSLVT-CPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELK 123
           A A  L  G      Q +  +  CP+  Q +Q ++  L N +R        +L K   L 
Sbjct: 156 ARAKQLEVGFRAVASQDIVAIDECPVLVQALQPIMQRLPNMLR--------RLSKPQALG 207

Query: 124 FILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL--E 181
            + L    +    +      S A L+ ++        AF             H A+L   
Sbjct: 208 HVELFSGTSVAVLLRHIAPLSEADLQVLKE-----FCAF-------------HEAQLWLH 249

Query: 182 GEEEIFLTETQSLL----EHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQM 237
           GE +    E  S+L     H+ D+ +  RP  F Q N  V E + A A  W+      ++
Sbjct: 250 GEGQPEPVEADSVLGFRLSHW-DLELAYRPGDFVQVNAGVNEAMVAQALEWLAPQPDERV 308

Query: 238 WDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALD------SA 291
            DLFCG+G FAL  A     V  +E     +  A  +A    + N+ F   D       A
Sbjct: 309 LDLFCGLGNFALPLARQVREVVAVEGVQTMVERAAVNAVSNDLHNVQFFQADLSQPLTDA 368

Query: 292 KFSQSQMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSY 349
           ++++   SA   VL++PPR G   E+  +L  L  K ++Y SCNP T+ +D  EL    Y
Sbjct: 369 EWAKQGFSA---VLLDPPRDG-ALEVVRKLATLGAKRLVYVSCNPATLARDTVELVKQGY 424

Query: 350 QMIRVQWFDMFPHTDHAEVLTL 371
           ++ R    DMFP T H E + L
Sbjct: 425 RLKRAGILDMFPQTAHVEAMAL 446