Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Variovorax sp. SCN45

 Score = 63.9 bits (154), Expect = 9e-15
 Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 25/196 (12%)

Query: 201 VPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTG 260
           V M  +P  F Q NP +   L   A   +      ++ D FCG+G F L  A+    V G
Sbjct: 279 VTMPFKPTDFTQVNPHINRALVGKALRLLDVQPDERVIDWFCGLGNFTLPLASQAREVLG 338

Query: 261 IEIEPEAIASAQRSAQMMGIDNLSFAALDSAKF---SQSQMSAPELV--------LVNPP 309
           IE     +A A  +         +   L  AKF   +  +M+   LV        LV+PP
Sbjct: 339 IEGSDTLVARATANYGTNQPATSARRELSPAKFVARNLFEMTPAMLVEDGSADKWLVDPP 398

Query: 310 RRGLGSELTAQLEA-----------LAPKYILYSSCNPQTMVKD---IAELSSYQMIRVQ 355
           R G  +   A  +              PK I+Y SCNP T+ +D   +   + Y+     
Sbjct: 399 REGAFALAKAMADLHQQPELCTDGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRCTFAG 458

Query: 356 WFDMFPHTDHAEVLTL 371
             +MFPHT H E + +
Sbjct: 459 VVNMFPHTAHVESIAV 474