Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Sphingobium sp. HT1-2

 Score = 46.6 bits (109), Expect = 1e-09
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 11/182 (6%)

Query: 198 FNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAA--PD 255
           F  V +   P SF Q  P     L    +  +   A   + DLFCG+G FAL   A  P 
Sbjct: 225 FGGVAVGFPPYSFLQATPDGEAALVKAVQDALP--ATGAVADLFCGLGTFALAIGANRPV 282

Query: 256 TAVTGI-EIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPELVLVNPPRRGLG 314
            A  G  ++      +  R+ + M  D+     L     +  +++    V+++PPR G  
Sbjct: 283 YAAEGARDLVLSLKLAGHRAQRRMVADHRD---LFRRPLTPEELNRFAAVVIDPPRAG-A 338

Query: 315 SELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRVQWFDMFPHTDHAEVLTLL 372
            E   QL       I Y SCNP +  +D A L    Y +  V     F  + H E++ + 
Sbjct: 339 REQAMQLAQSTVPLIAYVSCNPGSFARDAAHLVTGGYVLDSVMPVGQFRWSTHVELVGIF 398

Query: 373 VR 374
            R
Sbjct: 399 RR 400