Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas sp. SVBP6

 Score =  107 bits (268), Expect = 5e-28
 Identities = 105/384 (27%), Positives = 168/384 (43%), Gaps = 43/384 (11%)

Query: 3   CEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQ---WLPPVTSADTAFRNKA 59
           C++F   RC  C+L   P+++Q+  K + L E +     VQ   W  P+T  +  +R +A
Sbjct: 93  CKYF--DRCGGCNLQHLPHADQLALKQRLLAEQLQRVAGVQPEHWAAPLTGPEFGYRRRA 150

Query: 60  KMVVLGAAHAPILGI---EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKL 116
           ++ V     A  L +    +A    +++  CP+  QP+Q ++ +L   +R          
Sbjct: 151 RVAVRWDNKAKNLEVGFRAEASQDIVAIDDCPVLVQPLQSIMRHLPTLLRS--------- 201

Query: 117 KKKGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVH 176
                     L++ +  G   L F   + A+L R    L     A      +   +Q   
Sbjct: 202 ----------LSKPQVVGHVEL-FSGTALALLLRHTGPLGEGDLARLQAFCVEAGVQ--- 247

Query: 177 MARLEGEEEIFLTET-QSL---LEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREI 232
              L+GE E    +  QSL   LE +N + +  RP  F Q N +V   +   A  W+   
Sbjct: 248 -LWLQGEGEPSPVDAGQSLGFYLEPWN-LELAYRPGDFVQVNAQVNTAMIEQALAWLAPQ 305

Query: 233 APTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALD-SA 291
           A  ++ DLFCG+G FAL  A     V  +E     +  A  +A+   + N  F   D S 
Sbjct: 306 ADERVLDLFCGLGNFALPLARQAREVVAVEGVQTMVERAAANARSNNLHNTQFFQADLSQ 365

Query: 292 KFSQSQMSAP--ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--S 347
             + S  +A     VL++PPR G   E+  ++  L  K ++Y SCNP T+ +D  EL   
Sbjct: 366 PLAASGWAAGGFSAVLLDPPRDG-AYEVVRKIADLGAKRLVYVSCNPATLARDTVELVRQ 424

Query: 348 SYQMIRVQWFDMFPHTDHAEVLTL 371
            Y++      DMFP T H E + L
Sbjct: 425 GYRLKCAGILDMFPQTAHVEAMAL 448