Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  122 bits (305), Expect = 3e-32
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 82  LSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSENSGQFMLRFV 141
           L +  C L P P   +   + ++ +   +P ++ +K++G ++ +++ R+ N+G+ M+  V
Sbjct: 174 LDIKHCYLQPDPSNAIRLEVRDYAKKHDLPFFDIVKQEGYMRNLII-RTANTGEVMV-IV 231

Query: 142 ARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEEIFLTETQSLLEHFNDV 201
                  E +E  +  L A FP I  +   +           E +       + E    +
Sbjct: 232 QVYEDRPEEMEALMQHLAATFPEITSLQYVVNSKGNETFHDLEVVCYKGLPYIHEDMEGI 291

Query: 202 PMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGI 261
              + PKSF+QTN   A +LY   R          ++DL+ G G  A   A     V GI
Sbjct: 292 KFRVGPKSFYQTNADQAYELYKKTRELANLTGNELVYDLYTGAGTIANFVAHQAREVIGI 351

Query: 262 EIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQM----SAPELVLVNPPRRGLGSEL 317
           E  P AI  A+ ++Q+  I N +F A D       ++      P++V+ +PPR G+  ++
Sbjct: 352 EYVPSAIEDAKINSQINNITNTTFYAGDMKDILSDELIERHGRPDVVITDPPRAGMHEDV 411

Query: 318 TAQLEALAPKYILYSSCNPQTMVKDIAELS-SYQMIRVQWFDMFPHTDHAEVLTLLVRK 375
             +L  + P  I+Y SCNP T  +D+  LS  Y + RVQ  DMFP T H E + LL  +
Sbjct: 412 VKKLLQVHPNRIVYVSCNPATQARDVEWLSEKYDVTRVQPVDMFPQTHHVENIVLLTAR 470