Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 22/193 (11%)

Query: 201 VPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTG 260
           + M  +P  F Q NP +   L   A   +   A  ++ D FCG+G F L  A     V G
Sbjct: 285 ITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVIDWFCGLGNFTLPIATTAGEVLG 344

Query: 261 IEIEPEAIASAQR--SAQMMGIDN----LSFAALDSAKFSQSQMSAPELV---LVNPPRR 311
           IE     +A ++   +    G D      +FAA +  + +   + A  +    LV+PPR 
Sbjct: 345 IEGSEALVARSRENLAGNQAGRDRPLAPTTFAARNLFEMTPELLVADGVAQKWLVDPPRE 404

Query: 312 GLGSELTA-----QLEAL-----APKYILYSSCNPQTMVKD---IAELSSYQMIRVQWFD 358
           G  +   A     Q  AL      P+ I+Y SCNP T+ +D   +   + Y+ +     +
Sbjct: 405 GAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVTAGVVN 464

Query: 359 MFPHTDHAEVLTL 371
           MF HT H E + +
Sbjct: 465 MFAHTAHVESMAV 477