Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  390 bits (1002), Expect = e-113
 Identities = 196/374 (52%), Positives = 248/374 (66%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAK 60
           MQC  +   RC SC    Q  +EQ++ K   L  L+A     QW  P+   +  FRNKAK
Sbjct: 1   MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAK 60

Query: 61  MVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKG 120
           MVV G+   P+ G+    G P+ L  CPLYP     + + L+ +I  AG+ PYN  +K+G
Sbjct: 61  MVVSGSVEKPLFGMLHRDGTPVDLCGCPLYPASFDPVFSALKPFIARAGLTPYNVARKRG 120

Query: 121 ELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL 180
           ELK++LLT S+  G  MLRFV RS   L ++   LP L A  P + VI+ NIQPVHMA +
Sbjct: 121 ELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQLRVITANIQPVHMAIM 180

Query: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
           EGE EI+LT+ Q+L E FNDVP+ IRP+SFFQTNP VA +LYATAR WV ++    MWDL
Sbjct: 181 EGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDL 240

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
           FCGVGGF LHCA P   +TGIEI PEAIA A++SA  +G+  L F ALDS +F+ +Q   
Sbjct: 241 FCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATAQGET 300

Query: 301 PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFDMF 360
           P+LVLVNPPRRG+G  L   L  +AP++I+YSSCN QTM +DI  L +Y++ RVQ FDMF
Sbjct: 301 PDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPNYRIQRVQLFDMF 360

Query: 361 PHTDHAEVLTLLVR 374
           PHT H EVL LL R
Sbjct: 361 PHTAHYEVLALLRR 374