Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Erwinia tracheiphila SCR3

 Score =  412 bits (1060), Expect = e-120
 Identities = 204/372 (54%), Positives = 259/372 (69%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAK 60
           M C  +   RC SC   + PY+ Q+  K++ LR+L+A  +  QWLP VTS +  FRNKAK
Sbjct: 1   MYCALYNADRCHSCQWLSVPYASQIERKEEMLRQLLAGQSSAQWLPSVTSVEQGFRNKAK 60

Query: 61  MVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKG 120
           MVV G    P+LG+    G P+ L  CPLYP     + A L+ +I  AG+ PYN  K++G
Sbjct: 61  MVVSGRVERPVLGLMHRDGYPVDLCACPLYPDSFAAVFARLKPFIAQAGLTPYNVAKRRG 120

Query: 121 ELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL 180
           ELKFILLT S ++GQ MLRFV RS   + ++ + LP L    P + V+S NIQPV MA L
Sbjct: 121 ELKFILLTESRHTGQLMLRFVLRSKEKIAQLTQALPALQQQLPHLSVVSANIQPVPMAIL 180

Query: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
           EG+EEI +TE QSL E  NDVP+ IRP+SFFQTNP+VA  LYATAR WV E+    MWDL
Sbjct: 181 EGDEEIPITENQSLAEQLNDVPLWIRPQSFFQTNPEVAALLYATARQWVSELGVRTMWDL 240

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
           FCGVGGF LHCA+P+  +TGIEI  EAI  A+RSA  M +D +SFAALDS  F+  + + 
Sbjct: 241 FCGVGGFGLHCASPEMQLTGIEISAEAINCARRSATAMKLDKVSFAALDSTDFASGENAT 300

Query: 301 PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFDMF 360
           PELVLVNPPRRG+G++L   L ++ PK+ILYSSCN QT+  DIA +S Y++ +VQ FD+F
Sbjct: 301 PELVLVNPPRRGIGAQLCQWLSSMGPKWILYSSCNAQTLAIDIALMSDYKLEKVQLFDIF 360

Query: 361 PHTDHAEVLTLL 372
           PHT H+EVLTLL
Sbjct: 361 PHTGHSEVLTLL 372