Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Erwinia tracheiphila SCR3

 Score =  108 bits (270), Expect = 3e-28
 Identities = 84/305 (27%), Positives = 142/305 (46%), Gaps = 30/305 (9%)

Query: 77  AQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSENSGQF 136
           + G+ ++++ CP+    +  L+ +L   +        N L+    L  + L  ++N    
Sbjct: 159 SSGELVTVMQCPVLKPELNALIPHLHQLL--------NSLQVARRLGHVELVLADNGPLL 210

Query: 137 MLRFV-ARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEEIFLTETQSLL 195
           +LR + A S A  E++E+        F     +++ + P   A L+   E+         
Sbjct: 211 VLRHLDALSRADKEKLEQ--------FSHNNHVALFLAPDSDALLQVNGEL-------PF 255

Query: 196 EHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPD 255
              ND+ +   P+ F Q N ++ E++   A  W+       + DLFCG+G F L      
Sbjct: 256 YRINDLTLTFSPRDFIQVNGELNEKMVNQALVWLDIQPEDWLLDLFCGMGNFTLPAGKQV 315

Query: 256 TAVTGIEIEPEAIASAQRSAQMMGIDNLSFAA--LDSAKFSQSQMSAP-ELVLVNPPRRG 312
             VTG+E     +  A R+A+   ++N+ F    LD     Q   +     VL++PPR G
Sbjct: 316 KNVTGVEGVATLVGQAVRNAEKNNLNNVDFFQHNLDEDVVKQPWAAKGFNKVLLDPPRAG 375

Query: 313 LGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRVQWFDMFPHTDHAEVLT 370
             + + + +  LAP+ ++Y SCNP T+ +D   L  S Y++ RV  FDMFPHT H E + 
Sbjct: 376 AAAGM-SHIIKLAPQKVVYVSCNPTTLTRDSQTLLASGYELERVSLFDMFPHTGHVESMV 434

Query: 371 LLVRK 375
           L  RK
Sbjct: 435 LFSRK 439