Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Escherichia coli ECRC62

 Score =  413 bits (1061), Expect = e-120
 Identities = 207/375 (55%), Positives = 257/375 (68%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAK 60
           MQC  +   RC SC    QP  EQ++ K   L+ L+A     +W  PV+  +  FRNKAK
Sbjct: 1   MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60

Query: 61  MVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKG 120
           MVV G+   P+LG+    G P  L  CPLYP     + A L+ +I  AG+ PYN  +K+G
Sbjct: 61  MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120

Query: 121 ELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL 180
           ELK+ILLT S++ G  MLRFV RS   L ++ + LP L    P ++VI+VNIQPVHMA +
Sbjct: 121 ELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQEQLPQLKVITVNIQPVHMAIM 180

Query: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
           EGE EI+LTE Q+L E FNDVP+ IRP+SFFQTNP VA QLYATAR WVR++    MWDL
Sbjct: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
           FCGVGGF LHCA PD  +TGIEI  EAIA A++SA  +G+  L F ALDS +F+ +Q   
Sbjct: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGEV 300

Query: 301 PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFDMF 360
           PELVLVNPPRRG+G  L   L  +AP++I+YSSCN QTM KDI EL  Y++ RVQ FDMF
Sbjct: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGYRIERVQLFDMF 360

Query: 361 PHTDHAEVLTLLVRK 375
           PHT H EVLTLLV++
Sbjct: 361 PHTAHYEVLTLLVKQ 375