Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Dickeya dianthicola ME23

 Score =  400 bits (1028), Expect = e-116
 Identities = 201/375 (53%), Positives = 256/375 (68%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAK 60
           MQC  +    C SC      Y +QV +K Q L  L+A      WL PV SA+ AFRNKAK
Sbjct: 1   MQCARYNDGSCRSCQWLETAYPQQVADKQQHLLGLLAAHPVQCWLTPVASAEVAFRNKAK 60

Query: 61  MVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKG 120
           MVV G+   P+LG+    G  + L  CPLYP  +  + + L+ +I  AG+ PYN  +++G
Sbjct: 61  MVVSGSVERPLLGMLHRDGSAVDLCDCPLYPDSVAPVFSVLKTFIARAGLTPYNVARRRG 120

Query: 121 ELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL 180
           ELK++LLT+S  SG+FMLRFV RS A L ++   LP L    P + VIS NIQPVH A L
Sbjct: 121 ELKYLLLTQSTLSGRFMLRFVLRSEAKLAQLRAALPWLQQQLPQLAVISANIQPVHQAIL 180

Query: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
           EGE+EI LT+ Q+L E FN VP+ IRP+SFFQTNP+VA  LY  AR WV  +    +WDL
Sbjct: 181 EGEQEIPLTQAQALEERFNQVPLYIRPQSFFQTNPQVAAALYDAARQWVSALPVRSLWDL 240

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
           FCGVGGF LHCA+P+T +TGIEI PEAI  A+RSA  +G+ N+SFAALDS +F+  +   
Sbjct: 241 FCGVGGFGLHCASPETPLTGIEISPEAIDCARRSAVQLGLTNVSFAALDSTRFAVGEART 300

Query: 301 PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFDMF 360
           P+LV+VNPPRRG+G+EL   L  +AP Y+LYSSCN ++M KDIA L +YQ+ + Q FDMF
Sbjct: 301 PDLVIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMAKDIARLPAYQIQQAQLFDMF 360

Query: 361 PHTDHAEVLTLLVRK 375
           PHT H EVLTLL R+
Sbjct: 361 PHTAHYEVLTLLQRR 375