Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  115 bits (287), Expect = 3e-30
 Identities = 81/268 (30%), Positives = 126/268 (47%), Gaps = 7/268 (2%)

Query: 113 YNKLKKKGELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNI 172
           ++ +K+ G L+ +++  +      ++     +H   E+IE+ +  L   FP I  +   I
Sbjct: 202 FDMIKQNGLLRNLIIRTTTTDETMVIVQFGENHP--EQIEQVMDFLAGRFPSITSLLYII 259

Query: 173 QPVHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREI 232
                     +E         ++E    +   I PKSF+QTN K A +LY  AR +    
Sbjct: 260 NLKKNETFHDQEIHTFMGRDYIIEEMEGLQFRIGPKSFYQTNSKQAYELYKVAREFASLQ 319

Query: 233 APTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAK 292
               ++DL+ G G  A   A     V GIE   EAI  A+ +A+  G++N  F A D   
Sbjct: 320 GNEVVYDLYTGTGTIANFIAKKAKQVIGIEYVEEAIEDAKLNAKENGLENTQFYAGDMKD 379

Query: 293 FSQSQM----SAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL-S 347
               +     +AP++++ +PPR G+  ++   L  LA   I+Y SCNP T  +DIA L  
Sbjct: 380 MLTDEFIADHAAPDVIITDPPRAGMHEDVVNMLLKLAAPKIVYISCNPATQARDIALLGE 439

Query: 348 SYQMIRVQWFDMFPHTDHAEVLTLLVRK 375
            Y +  VQ  DMFP T H E + LL  K
Sbjct: 440 KYSVDIVQPVDMFPQTYHVENVVLLTLK 467