Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Bacteroides stercoris CC31F

 Score =  115 bits (289), Expect = 2e-30
 Identities = 104/401 (25%), Positives = 177/401 (44%), Gaps = 46/401 (11%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVT----SADTAF-RNKAKM---- 61
           C  C     PYSEQ+  K +Q+ + +     V+ LP ++    SA T F RNK +     
Sbjct: 82  CGGCKWQVLPYSEQIRYKQKQVTDNLTRIGKVE-LPEISPILGSAKTEFYRNKLEFTFSN 140

Query: 62  ------------VVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAG 109
                       VV    +A    I +A  + L++  C L       +   + ++     
Sbjct: 141 KRWLTAEEVRQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHN 200

Query: 110 IPPYNKLKKKGELKFILLTRSENSGQFMLRFVARSHA---------VLERIERNLPTLIA 160
            P  N    +G L+ +++ R+  +G+ M+  + +            +L+ +    P + +
Sbjct: 201 YPFINLRTHEGMLRNMIV-RTSTTGELMVILICKIEKDEEMALFKQLLQYVADTFPEITS 259

Query: 161 AFPMIE-VISVNIQPVHMARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAE 219
              +I    +  I  + +   +G++ IF        E    +   + PKSF+QTN + A 
Sbjct: 260 LLYIINNKCNDTITDLDVHTFKGKDHIF--------EEMEGLRFKVGPKSFYQTNSEQAY 311

Query: 220 QLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMG 279
            LY  AR +        ++DL+ G G  A   +     V GIE  PEAI  A+ ++++ G
Sbjct: 312 TLYKVARNFAGLTGNELVYDLYTGTGTIANFVSGQARQVIGIEYVPEAIEDAKVNSEING 371

Query: 280 IDNLSFAALDSAKFSQ----SQMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCN 335
           I N  F A D          ++   P++++ +PPR G+  ++   +    PK I+Y SCN
Sbjct: 372 IRNTLFFAGDMKDMLTQDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCN 431

Query: 336 PQTMVKDIAEL-SSYQMIRVQWFDMFPHTDHAEVLTLLVRK 375
           P T  +D+  L + Y++  VQ  DMFPHT H E + LL  K
Sbjct: 432 PATQARDLQLLDAKYRVKAVQPVDMFPHTHHVENVVLLELK 472