Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA m(5)U747 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score =  414 bits (1064), Expect = e-120
 Identities = 205/375 (54%), Positives = 258/375 (68%)

Query: 1   MQCEFFIQKRCTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAK 60
           MQC  +   RC SC    QP  EQ++ K   L+ L+A     +W  PV+  +  FRNKAK
Sbjct: 1   MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60

Query: 61  MVVLGAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKG 120
           MVV G+   P+LG+    G P  L  CPLYP     + + L+ +I  AG+ PYN  +K+G
Sbjct: 61  MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFSALKPFIARAGLTPYNVARKRG 120

Query: 121 ELKFILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARL 180
           ELK+ILLT S++ G  MLRFV RS   L ++ + LP L    P ++VI+VNIQPVHMA +
Sbjct: 121 ELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQEQLPQLKVITVNIQPVHMAIM 180

Query: 181 EGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDL 240
           EGE EI+LTE Q+L E FNDVP+ +RP+SFFQTNP VA QLYATAR WVR++    MWDL
Sbjct: 181 EGETEIYLTEQQALAERFNDVPLWVRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240

Query: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
           FCGVGGF LHCA PD  +TGIEI PEAIA A++SA  +G+  L F ALDS +F+ +Q   
Sbjct: 241 FCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATAQGEV 300

Query: 301 PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSSYQMIRVQWFDMF 360
           PELVLVNPPRRG+G  L   L  +AP++I+YSSCN QTM KD+ EL  Y++ RVQ FDMF
Sbjct: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDVRELPGYRIERVQLFDMF 360

Query: 361 PHTDHAEVLTLLVRK 375
           PHT H EVLTLLV++
Sbjct: 361 PHTAHYEVLTLLVKQ 375