Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

 Score = 57.4 bits (137), Expect = 7e-13
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 12/202 (5%)

Query: 177 MARLEGEEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQ 236
           +AR+    EI +   + ++E F  +P V  P   F    K AE   A A   +  +  ++
Sbjct: 219 IARVSLSGEILIEPQKPIIE-FGGIP-VSPPAGGFTQATKQAED--AMAELMLAHVGKSK 274

Query: 237 -MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQ-MMGIDNLSFAALDSAK-- 292
            + DLFCG G FAL  A     V  +E E +A+ +   +A+   G+  +S    D  +  
Sbjct: 275 RIADLFCGSGTFALRLARIGR-VHAVEAEDKALKALDFAARNTQGLKPVSVEKRDLFRRP 333

Query: 293 FSQSQMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELS--SYQ 350
              S++   + V+ +PPR G   +   +L     K I+  SCNP T+ +D+A L+   Y+
Sbjct: 334 LMTSELKNYDAVVFDPPRAGAEVQCK-ELARSTVKKIVAVSCNPLTLARDLAILTEGGYR 392

Query: 351 MIRVQWFDMFPHTDHAEVLTLL 372
           + RV   D F  + H E + +L
Sbjct: 393 VTRVTPVDQFLWSPHVEAVAVL 414