Pairwise Alignments

Query, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Acinetobacter radioresistens SK82

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 93/375 (24%), Positives = 151/375 (40%), Gaps = 30/375 (8%)

Query: 11  CTSCHLCAQPYSEQVTNKDQQLRELI---APATDVQWLPPVTSADTAFRNKAKMVVLGAA 67
           C  C L      EQ+  K   L   +   A     +WLP + S    +R KA++ V   A
Sbjct: 96  CGGCSLQHMHPDEQIRFKQDVLASHLKHFAAIEPEEWLPALRSTREDYRRKARIGVRFLA 155

Query: 68  HAPIL--GIEDAQGQPL-SLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKF 124
               L  G  + Q   L S+ TC +  + M   L  L+  +          L  K  +  
Sbjct: 156 KEQKLKFGFRERQTNHLVSIQTCKVLDRAMAGHLNELQLLLE--------SLTAKAAIGH 207

Query: 125 ILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEE 184
           I L   ++    ++R + +    L +++ N  T  A     ++      P  + R++  +
Sbjct: 208 IELAMGDHDIALVIRNIEK----LPQVDVNQLTQYALSRQWQLYLQPAGPESLYRVDQPD 263

Query: 185 EIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGV 244
                  +  LE F D+     P  F Q N  V  Q+ + A   +      ++ DLFCG+
Sbjct: 264 ASKYLHYR--LEEF-DIDFAFSPLDFTQVNSTVNSQMVSLACNLLNLQPGERVLDLFCGL 320

Query: 245 GGFAL---HCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAP 301
           G F+L    C      V  +E   + +     +A+   + N+ F + D  K   S   A 
Sbjct: 321 GNFSLPLARCVGETGQVIAVEGSEDMVKRGTENARSNKLLNVRFYSQDLTKDFSSHSWAK 380

Query: 302 ---ELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL--SSYQMIRVQW 356
              + +L++PPR G   E+   L     K I+Y SCNP T+ +D   L    Y++ +   
Sbjct: 381 QGFDALLIDPPRAG-AEEVMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGYRLKKAGV 439

Query: 357 FDMFPHTDHAEVLTL 371
            DMF HT H E + L
Sbjct: 440 MDMFTHTGHVESIVL 454