Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  278 bits (711), Expect = 6e-79
 Identities = 185/529 (34%), Positives = 292/529 (55%), Gaps = 36/529 (6%)

Query: 126 WYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELAELVN- 184
           WY   ++  K+ +  PYAD  +G+ ++     +     G  +G +  D++L  L  + + 
Sbjct: 190 WYTCPRDTRKVCLLDPYADEVAGKQMLMTTISLPLMVDGNVIGVVGIDIALNTLQAVTDA 249

Query: 185 -EVKLFD-AGYVFIVSEDGTTIAHP-KKEFNGKPMSEFLG-ESKINVD------------ 228
            + +LF+ A ++ I+S  G   A   + E  GK + + +G E K  V             
Sbjct: 250 AQKELFNGAAHLDILSSTGLIAASSGQPEIVGKTLMDTVGAEGKEIVQLLASDSPMIREQ 309

Query: 229 --THQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYA-------ALDELRRS----TLI 275
             T + +   KP A      + + W V V +   +  A        LD+ + +     L+
Sbjct: 310 DHTIRAVYPVKPIA------DAKSWGVVVTLPRNVMLADTLKLQDVLDKAQAAGTLKALL 363

Query: 276 FTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGF 335
               A ++ + ++      + +P++ +   ++++ASG+GDLTQRL+    +E  +LA  F
Sbjct: 364 VGAAAALLGLLLIWLTATGVTRPINNVAAMLKDIASGDGDLTQRLAYAKKDELGELANWF 423

Query: 336 NTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTS 395
           N F + LQ  + Q K    E    ++ +S   +Q++E M+ Q  E++Q+ATA +EM+ T+
Sbjct: 424 NRFLDKLQPTIAQIKQSITEARGTADQSSAIARQTSEGMQVQFREIDQVATASNEMSATA 483

Query: 396 SDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIE 455
            DVAN+A  AASAA+ AD +A  G  ++ ++T+ I +L+  +  AV +V+ L   +  I 
Sbjct: 484 HDVANSASNAASAARGADQSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIG 543

Query: 456 TVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIE 515
           +VL+VI  IA+QTNLLALNAAIEAARAGESGRGFAVVADEVR LA+RTQ S  EIR +IE
Sbjct: 544 SVLEVIRSIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIE 603

Query: 516 KLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSL 575
           ++QSG   V   M  S+  A S   Q   A +AL KI  A+  ISDMN+QIASAAE+QS 
Sbjct: 604 RIQSGTRGVVATMHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSA 663

Query: 576 VAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624
           VAEE+N N   I+ +++ +   A E+            +Q  ++++F+V
Sbjct: 664 VAEEVNRNVSAIRTVTETLTGQATESAAISSQLNALASQQMKLMDQFRV 712