Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  363 bits (931), Expect = e-104
 Identities = 215/606 (35%), Positives = 347/606 (57%), Gaps = 17/606 (2%)

Query: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRDEIRSMVSDSVDEIVDGVSKTTAEVINGR 60
           ++FSHKI+ A+S++++A  AL +    +  R+ IR  +++ + E+ D  +      + GR
Sbjct: 5   LRFSHKILLAASLIVIAAFALFTLYNDYLQRNAIRDDLNNYLQEMGDVTASNIQTWLGGR 64

Query: 61  KSIAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPSWNPGPTWD 120
            ++ + A   I  NPEP  V +++ Q  + ++F+    G  K    I  D     G  +D
Sbjct: 65  IALVENAAQNIAINPEPSAVASLLEQKTLTSSFMATYVGDSKGAFTIRPDTKMPDG--FD 122

Query: 121 PRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180
           PRVRPWYK A+++    +T PY D+A+G++++SVATP       Q +G +  D+SL  L 
Sbjct: 123 PRVRPWYKGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGT--QSIGVVGGDLSLQTLV 180

Query: 181 ELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGES--KINVDTHQVIINGKP 238
           + +  +     GY F+VS DG  + HP K    K +++   ++  KI+ D  +V  NGK 
Sbjct: 181 DNIGALNFGGMGYAFLVSADGKVLVHPDKNLVMKTLADVYPKNTPKISADFSEVEANGKD 240

Query: 239 YAVSFSDVEG---EDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVL 295
             V+F  ++G    +W +G+ +D++ ++A L E R S +I T IA+VI + +L  ++R+L
Sbjct: 241 NIVTFIPIKGLPSVNWDLGISVDKDKSFAMLSEFRTSAVIATFIAVVIIIALLGMLIRIL 300

Query: 296 MKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQ----SKA 351
           M+PL  +  A+Q++A GEGDLT+RL+    +EF  L   FN F E +   + +    ++ 
Sbjct: 301 MQPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIHTSIREVSSATEH 360

Query: 352 IGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKV 411
           +    LR   +++ ++  S E    Q +    +A A++++   + ++A NA  A+  A  
Sbjct: 361 VNEVALRVVSASNSSMVNSDE----QANRTNSVAAAINQLGAAAQEIARNAAQASHQASD 416

Query: 412 ADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLL 471
           A   A  G  VV +  KA++ LS+ I A+  +++ L S T NI  +L+VI  I+ QTNLL
Sbjct: 417 ARHLAEDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITSISQQTNLL 476

Query: 472 ALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHS 531
           ALNAAIEAARAGE+GRGFAVVADEVR LA RTQ+S  +++ MIE+LQ GA      M  S
Sbjct: 477 ALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGARESVSTMGES 536

Query: 532 KDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLS 591
           +  +  +V+ A  A E L  +   I +I  MN  +A+A EEQ+ V E IN +  +I  L+
Sbjct: 537 QRHSLESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITEINTLN 596

Query: 592 DQVAES 597
            +  E+
Sbjct: 597 QEGVEN 602