Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  265 bits (677), Expect = 5e-75
 Identities = 201/660 (30%), Positives = 314/660 (47%), Gaps = 53/660 (8%)

Query: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRDEIRSMVSDSVDEIVDGVSK--------- 51
           MK  +K+V A   +    V+L++       R E       +VD+ +DG ++         
Sbjct: 1   MKIKNKLVLAFVSVAFIPVSLVAVISVMNARTE-------AVDQFIDGSTREIRQIDGNI 53

Query: 52  --------------TTAEVINGRKSIAQYATSLIENNPEPDNVRTIISQ----PLIKNTF 93
                          T  V     ++  Y  +   + P P   +T+I +           
Sbjct: 54  RQFFDGTLQNVDQMATDSVYTSVNTLKNYQPADAASQPMPAEAQTVIERFARYGATHPAA 113

Query: 94  LLVGFGLEKDGSNINNDPSWNPGPT---WDPRVRPWYKDAK-NAGKLVITAPYADSASGE 149
            ++  GLE DG+       W   P    +DPR RPWYK A  + GK V T  Y       
Sbjct: 114 AILSIGLE-DGTYAK----WPDDPQLAKYDPRTRPWYKAAMASPGKTVRTPAYYYDKDDV 168

Query: 150 ILVSVATPVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKK 209
            LV  A  + ++  G+  G     VSL  L ELV  +KL ++GYV +V EDG  +  P+ 
Sbjct: 169 ALVGTARALLEN--GKAKGVFVVSVSLKNLTELVKSIKLGESGYVMLV-EDGVVLVDPRN 225

Query: 210 E-FNGKPMSEFLGESKINVDTHQ----VIINGKPYAVSFSDVEGEDW-YVGVVIDEEIAY 263
              N KP+           +T Q    V+I+G  Y  +     G  W Y+G++   E+  
Sbjct: 226 AAHNFKPLKGLGAAYAQLAETPQGSTDVVIDGVHYMANVWTSPGLGWRYIGLIEHREVMA 285

Query: 264 AALDELRRSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTN 323
            A      + LI  V+ L+  +    F  +V++KP+  ++  +Q++A GEGDL   L   
Sbjct: 286 EATRMTYLTALIVGVLVLIFGLIAAAFS-KVIVKPIGQVSTGLQSIAQGEGDLRHELQVQ 344

Query: 324 TDEEFAKLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQ 383
             +E A+LA  FN F   +++ +    A  A +   S+  S       EA   Q   +E 
Sbjct: 345 GKDETAELAGWFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVEL 404

Query: 384 LATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDD 443
           ++TA +EM  T+++VA +  GAA +A+      A G   +  TT  ++ L   +  +   
Sbjct: 405 VSTAFNEMVATANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQA 464

Query: 444 VKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRT 503
           +  LE+ + +I  +L  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+RT
Sbjct: 465 MVELEAGSRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRT 524

Query: 504 QQSTTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMN 563
             ST EI  ++  L++    V   M    D + ++V+  + A ++ E I+ ++ +I D N
Sbjct: 525 SDSTGEIEQLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQN 584

Query: 564 IQIASAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFK 623
           +QI++AAEEQ  VAEEIN +  +I D +  V   A+ A       +    E + ++ +FK
Sbjct: 585 LQISAAAEEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRFK 644