Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  259 bits (661), Expect = 3e-73
 Identities = 178/534 (33%), Positives = 275/534 (51%), Gaps = 18/534 (3%)

Query: 97  GFGLEKDGSNINNDPSWNPGPTWDPRVRPWYKDAKNA-GKLVITAPYADSASGEILVSVA 155
           G+    D + +NN         +DPRVRPWY+ A  A GK V T  Y  +     L+   
Sbjct: 124 GYASWPDDTKLNN---------YDPRVRPWYQAAIAAPGKTVRTGAYYWAPDDVTLIGTV 174

Query: 156 TPVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTTIAHPKK-EFNGK 214
             V D ATG  LG +  DVSL +L ELV  +KL D+GY+ +V  +G  +  P   + N K
Sbjct: 175 HTVAD-ATGNILGVVGLDVSLKQLTELVRNIKLGDSGYLMLVEGNGNVLVDPSDAKHNFK 233

Query: 215 PMSE----FLGESKINVDTHQVIINGKPYAVSFSDVEGEDW-YVGVVIDEEIAYAALDEL 269
           P+++    +   +K      Q+ I+G  Y  +    +   W ++G++  +E+   A    
Sbjct: 234 PLADLGPNYAELAKRGDGVTQIEIDGVAYMANMVSSKDLGWRFIGLIKRDEVMAGATRLT 293

Query: 270 RRSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFA 329
                I  V+ALV ++    F   V+++P+  + D +Q +A GEGDLT++L     +E A
Sbjct: 294 WLIAAIAAVLALVFAIVGASF-ASVIVRPIRGVADGLQEIAEGEGDLTRQLKVQGKDETA 352

Query: 330 KLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMH 389
            LA  FN F   + + + +     +++   +  T        +A   Q   +E ++TA +
Sbjct: 353 SLAGWFNQFLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAGRQREAVELVSTAFN 412

Query: 390 EMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLES 449
           EM  T+++VA +   AA++A         G   + + T ++  LS  +  +   ++ LE 
Sbjct: 413 EMVATANEVARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQTMQQLEQ 472

Query: 450 ATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTE 509
            + NI T+L  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+RT  ST E
Sbjct: 473 DSKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGE 532

Query: 510 IRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASA 569
           I +++  L      V   M  S   + ++V + Q A ++ +KIR ++  I D N QIA+A
Sbjct: 533 IDSLLGNLARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGSVDSIRDQNTQIATA 592

Query: 570 AEEQSLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFK 623
           AEEQ  VAEEIN +  +I   +  V   A  A       T+   +   ++ +FK
Sbjct: 593 AEEQHQVAEEINRHIAQIHADAQLVEGFAHSAQTGSGRLTDISGQLKGLVGRFK 646