Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  273 bits (697), Expect = 2e-77
 Identities = 183/536 (34%), Positives = 297/536 (55%), Gaps = 30/536 (5%)

Query: 116 GPTWDPRVRPWYKDAKNAGKLVITAPYADSASGE--ILVSVATPVKDSATGQFLGSIFYD 173
           GP+ + +   W+   +   K  +  PY    +G+  ++ S+  P+   A G+ + S+  D
Sbjct: 183 GPSGE-KANAWFTCPRTLLKPCVIEPYFYRINGQNVLMTSIVFPLM--ANGKVIASLSVD 239

Query: 174 VSLAELAELVNEV--KLFDA----------GYVFIVSEDGTTIAHPKKEFNGKPMSEFLG 221
           ++L  L  +  +   KL+D           G +   S D + ++    + +    ++ +G
Sbjct: 240 INLNSLQAVSQQASQKLYDGQTQVSILSPTGLLAGYSPDASKLSQRLDQVDTANGAQLIG 299

Query: 222 E--SKINVDTHQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR--------R 271
              S  ++ + +     K  A      EG+ W V + + E++     + L+        R
Sbjct: 300 ALASSTHIRSLRTDHQLKVLAPFAPIPEGKPWGVLLDVPEKVLVGPAEALKAQMDAENTR 359

Query: 272 STLI---FTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEF 328
            TL+     ++A V+ + ++  + R + +P+  +   ++++ASGEGDLT+RL+ +  +E 
Sbjct: 360 GTLLELGLGLLAAVVGLILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYDKQDEL 419

Query: 329 AKLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAM 388
            +LA  FN F + LQ  + + K    +    ++ ++    Q++  M  Q  +++Q+ATA 
Sbjct: 420 GQLAGWFNRFLDKLQPIIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATAS 479

Query: 389 HEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLE 448
           HEM+ T+ DVA +A  AA AA+ AD A   G  V+  TT  I  L++ +  A+  V+ L 
Sbjct: 480 HEMSATAQDVARSAAQAAQAARDADQATRDGLTVIEHTTHNIGALASDMSTAMTQVEGLA 539

Query: 449 SATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTT 508
           + +  I +VL+VI  IA+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LAQRTQ+S  
Sbjct: 540 ANSEKIGSVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVE 599

Query: 509 EIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIAS 568
           E R +IE LQ+G  AV  +M +S   A  +V Q   A  AL +I  A+  ISDMN+QIAS
Sbjct: 600 ETRLVIEHLQNGTEAVVGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIAS 659

Query: 569 AAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAILNKFKV 624
           AAEEQS VAEEINNN   I+D+++ ++E A+E+    Q       +Q  ++++F+V
Sbjct: 660 AAEEQSAVAEEINNNVATIRDVTESLSEQANESARVSQALNSLANQQQGLMDQFRV 715