Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  361 bits (926), Expect = e-104
 Identities = 211/610 (34%), Positives = 345/610 (56%), Gaps = 25/610 (4%)

Query: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRDEIRSMVSDSVDEIVDGVSKTTAEVINGR 60
           +KFSHKI+ A+S++++A   L +    +  R+ +   + +++++  +  +      ++GR
Sbjct: 5   LKFSHKILLAASLVVIAAFTLFTFYNDYLQRNALHVQLKENLNQTSESTAGNIRNWLSGR 64

Query: 61  KSIAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPSWNPGPTWD 120
             + +       +   P     ++ QP +  TF+ +  G   DGS +   P  +    +D
Sbjct: 65  ILLVENLAENASSPQSPQEQNRVLGQPTLIATFMSIYQG-RSDGSFVTQPPD-DMSADYD 122

Query: 121 PRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVK-DSATGQFLGSIFYDVSLAEL 179
           PR RPWY DA  AGK ++T PY D+ +  ++V++ATP+K DS     +G    D+SL  L
Sbjct: 123 PRTRPWYVDALRAGKTILTEPYLDAVTKGLVVTLATPIKGDSGVSGVIGG---DLSLEIL 179

Query: 180 AELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGES--KINVDTHQVIINGK 237
            ++++ +++   GY F+V  +G  + HP      K ++E    +  +++ D  +    GK
Sbjct: 180 VKMISSLRMHGDGYAFLVDANGRILVHPDTSLVMKTLAEVYPANTPRLSQDLSESEYAGK 239

Query: 238 PYAVSFSDVEG---EDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRV 294
              ++F+ V+G    +WYVGV +D++IAYAAL E R S ++ TVIA+V+ + +L  ++ V
Sbjct: 240 TQILTFAHVDGLPSVNWYVGVAMDKDIAYAALGEFRNSAIVATVIAVVLIILLLGMLLSV 299

Query: 295 LMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQL-------I 347
           L++PL+ +  A+ ++A+GEGDLT+RL   + +EF  L  GFN F E +   +       +
Sbjct: 300 LLRPLNLMGRAMHDIAAGEGDLTKRLVIESQDEFGHLGNGFNLFVERIHDSMREVASSTV 359

Query: 348 QSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAAS 407
           Q   +   +L  S S+ +   Q       Q H    +A A++E+   + ++A NA  A+ 
Sbjct: 360 QLNEVALRVLNASNSSMLNSDQ-------QSHRTNSVAAAINELGAATQEIAQNAARASG 412

Query: 408 AAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQ 467
            +  A   A+ G DVV +  +A+  LS  I +A   ++ L + TANI  +L VI  I+ Q
Sbjct: 413 HSSDARTLASDGQDVVGQNIEAMSRLSKRISSASGQIETLNTKTANIGQILDVITGISQQ 472

Query: 468 TNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVA 527
           TNLLALNAAIEAARAGE+GRGFAVVADEVR+LA RTQ+S ++++ MIE+LQSGA      
Sbjct: 473 TNLLALNAAIEAARAGEAGRGFAVVADEVRSLAHRTQESASQVQEMIEQLQSGAREAVSI 532

Query: 528 MSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKI 587
           M+ S+  +   V  A  A  +LE +   I +I  MN  +A+A EEQ+ V E IN +  +I
Sbjct: 533 MNDSQRESVETVGIANKAVASLEHVTERIGEIDGMNQSVAAATEEQTAVVEAINVDITEI 592

Query: 588 KDLSDQVAES 597
             L+ Q  E+
Sbjct: 593 NTLNQQGVEN 602