Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  343 bits (881), Expect = 1e-98
 Identities = 212/629 (33%), Positives = 335/629 (53%), Gaps = 10/629 (1%)

Query: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRDEIRSMVSDSVDEIVDGVSKTTAEVINGR 60
           +KF HKI+ A++ +++   AL +    +  R  I   +  SV +     + +    ++GR
Sbjct: 3   LKFRHKILLAAAGVVVLAFALFTLYNDYLQRKTINQNLESSVGQAGQLTASSVQNWLSGR 62

Query: 61  KSIAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPSWNPGPTWD 120
             + +  T  +       ++  ++SQ  + +TF     G  K        P+ +    +D
Sbjct: 63  ILVLENLTQNVAFQGVNSDLSGLVSQSALVSTFQFTYVGDSK--GTFTQRPNVDMPAGYD 120

Query: 121 PRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180
           PR RPWYK   +AGK +++APY  S  G ++V++A+PVK  A GQ  G +  D+SL  L 
Sbjct: 121 PRQRPWYKSTVDAGKTILSAPYLASVGG-LVVTIASPVK--AAGQVTGVVGGDLSLDTLV 177

Query: 181 ELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKINVDTH--QVIINGKP 238
           +++N V+    GY F+VS DG  I  P KE   K + +      I++D    +V +NG+ 
Sbjct: 178 KIINSVEFGGLGYAFLVSGDGQIIVSPDKEQVMKNLKDIYPGQTISLDARLREVTLNGQQ 237

Query: 239 YAVSFSDVEG---EDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVL 295
             +SF+ + G    DWY+G+ ID++ AYA L + R S ++  +IA+ +   +L  ++R L
Sbjct: 238 RLLSFTPITGLPSADWYIGLSIDKDKAYAPLSQFRSSAMVAVLIAVAVIALLLSLLIRAL 297

Query: 296 MKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGAE 355
           M+PL  +  A+Q++A GEGDLT+RLS    +EFA L   FN F E +   +++  +   +
Sbjct: 298 MRPLTDMGRAMQDIAQGEGDLTRRLSIQGKDEFAALGGSFNQFVERVHASIVEVSSATLQ 357

Query: 356 ILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDA 415
           +   S+    +   S      Q      +A A++E+   + ++A NA  A+  A  A + 
Sbjct: 358 VHDLSQRVVNSSNSSIVGFDEQSARTNNVAAAINELGAATQEIARNASDASIQASEARNQ 417

Query: 416 AAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNA 475
           A  G  VV KT  A+  LSA I  +   ++ L ++T NI  +L VI  I+ QTNLLALNA
Sbjct: 418 AEDGQVVVEKTIHAMSALSAKISDSCTQIEQLNASTENIGHILDVIKGISQQTNLLALNA 477

Query: 476 AIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTA 535
           AIEAARAGE+GRGFAVVADEVR LA RTQ S  EI  MI  LQSG+    + M+ S+ ++
Sbjct: 478 AIEAARAGEAGRGFAVVADEVRNLAHRTQTSADEIHKMIGSLQSGSQHAVLNMNESQTSS 537

Query: 536 ASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVA 595
             +V  A  A   L  +   I  I  MN  +A+A EEQ+ V E +N +  +I  L+ Q  
Sbjct: 538 QESVEVANQAGSRLRDVTRRIGDIDGMNQSVAAATEEQTAVVETLNIDINQINTLNQQGV 597

Query: 596 ESADEANMSMQIQTENIREQDAILNKFKV 624
            + +E        ++       +++ FK+
Sbjct: 598 ANLNETLKDCAALSQQAGRLKQLVDSFKI 626