Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  234 bits (597), Expect = 9e-66
 Identities = 141/347 (40%), Positives = 206/347 (59%), Gaps = 7/347 (2%)

Query: 258 DEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLT 317
           D+E A A     R + +  T++A+++ +   + I R + +PL      +  +ASG  DLT
Sbjct: 281 DQESAQA-----RTTQITCTLLAIILGIIAAVIITRQITRPLRETLAVVDRIASG--DLT 333

Query: 318 QRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQ 377
           Q L+    +E   L  G      TL++ +   +    +I   +E  S   +Q++  + SQ
Sbjct: 334 QTLAVTRSDELGVLQQGIQRMGTTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQ 393

Query: 378 LHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATI 437
             E +Q+ATAMHEM+ T ++VA NA+ A+ AA  AD  A  G  VV +    I+ L+  +
Sbjct: 394 KVETDQVATAMHEMSATVAEVARNAEQASQAASNADREARDGDKVVGEAIAQIERLANEV 453

Query: 438 DAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVR 497
             +VD +  LE  +  I  V+ VI  +A+QTNLLALNAAIEAARAGE+GRGFAVVADEVR
Sbjct: 454 GRSVDAMTELEQESDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVR 513

Query: 498 TLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQ 557
            LAQRTQQST EI  ++  LQSG   V+  M +S++   S+V  ++ A  +L  I   + 
Sbjct: 514 GLAQRTQQSTVEIETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVS 573

Query: 558 QISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMS 604
            I  MN QIA+AAEEQS VAEEI+ + V ++D+S+Q A +++E   S
Sbjct: 574 SIQAMNQQIAAAAEEQSAVAEEISRSIVNVRDVSEQTASASEETAAS 620



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 31/258 (12%)

Query: 360 SESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAAG 419
           + +T  T Q +   + S + +L+ L T     + T +D     + +  A +       A 
Sbjct: 191 TNATPETEQAAVSKLDSAIKDLDALKTTF---SGTQADQLRQLETSLMAYRTTLQNFKAA 247

Query: 420 TDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEA 479
           T  + +  K + T    I    +D+  L+    + E+       I     LLA+   I A
Sbjct: 248 TGTIVQARKEMTTQGQDIVKISEDMYKLQLDRRDQESAQARTTQIT--CTLLAIILGIIA 305

Query: 480 ARAGESGRGFAVVADEVRTLAQRTQQSTTEIRN---MIEKLQSGANAVAVAMSHSKDTAA 536
           A          V+          T+Q T  +R    +++++ SG     +A++ S +   
Sbjct: 306 A----------VII---------TRQITRPLRETLAVVDRIASGDLTQTLAVTRSDELGV 346

Query: 537 SAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVAE 596
                 QG       +R  I  I D  +QIASAAEE S V E+ +      K  +DQVA 
Sbjct: 347 LQ----QGIQRMGTTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVAT 402

Query: 597 SADEANMSMQIQTENIRE 614
           +  E + ++     N  +
Sbjct: 403 AMHEMSATVAEVARNAEQ 420