Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  230 bits (587), Expect = 1e-64
 Identities = 142/346 (41%), Positives = 207/346 (59%), Gaps = 4/346 (1%)

Query: 260 EIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQR 319
           E+  AA  + +    + TV+AL + +     I R ++ PL     A + VASG  DLTQ 
Sbjct: 276 EVRDAAAAQAKTLLTVATVLALALGLLAAWAITRQIIIPLRQTLRAAERVASG--DLTQS 333

Query: 320 LSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGA-EILRGSESTSMTLQQSAEAMRSQL 378
           L     +E  +L    +  T+ L ++LI     G  +I   +E  S   +Q++  + +Q 
Sbjct: 334 LQVQRRDELGQLQASMHRMTQGL-RELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQK 392

Query: 379 HELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATID 438
            E +Q+ATAM++M  T  +VA NA+ A+ AA +AD  A  G  VV +    I+ L++ + 
Sbjct: 393 VETDQVATAMNQMTATVHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVV 452

Query: 439 AAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRT 498
            + + + +L++ +  I +VL VI  +A QTNLLALNAAIEAARAGE+GRGFAVVADEVR+
Sbjct: 453 NSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRS 512

Query: 499 LAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQ 558
           LAQRTQQST EI  +I  LQSG   VA  M +S+    S+V   + A  +LE I   +  
Sbjct: 513 LAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSS 572

Query: 559 ISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMS 604
           I  MN QIA+AAEEQ+ VAEEIN + + ++D+SDQ + +++E   S
Sbjct: 573 IQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQTSAASEETASS 618



 Score = 35.4 bits (80), Expect = 8e-06
 Identities = 62/273 (22%), Positives = 104/273 (38%), Gaps = 49/273 (17%)

Query: 368 QQSAEAMRSQLHELEQL-ATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKT 426
           Q + +A+   L EL  L A    E A +  D A    G   A     +A  A    + + 
Sbjct: 197 QTALKAIDQALAELRALPAKVPAEHAASLDDAATAMGGYRDAVTQFGNAQLASEQALQRM 256

Query: 427 TK-AIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGES 485
            +     L A+        +V ++A A  +T+L V   +A    LLA             
Sbjct: 257 VEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLA------------- 303

Query: 486 GRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTA---ASAVNQA 542
              +A+    +  L Q  + +        E++ SG    ++ +    +     AS     
Sbjct: 304 --AWAITRQIIIPLRQTLRAA--------ERVASGDLTQSLQVQRRDELGQLQASMHRMT 353

Query: 543 QGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEE----INNNTVKIKDLS------- 591
           QG  E        I  I D   QIASAAEE S V E+    +NN  V+   ++       
Sbjct: 354 QGLREL-------IGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMT 406

Query: 592 ---DQVAESADEANMSMQIQTENIREQDAILNK 621
               +VA +A++A+ +  +  +  RE D ++ +
Sbjct: 407 ATVHEVARNAEQASEAALMADQQAREGDRVVGE 439