Pairwise Alignments

Query, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  261 bits (666), Expect = 9e-74
 Identities = 159/461 (34%), Positives = 250/461 (54%), Gaps = 11/461 (2%)

Query: 144 DSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELAELVNEVKLFDAGYVFIVSEDGTT 203
           D A+GE+ + +   V+    G+ +G     + + EL++L+++    + G VF+V  DG  
Sbjct: 158 DGATGELALFIDYRVEKE--GKLVGVAGMGLRMTELSKLIHDFSFGEHGKVFLVRNDGLI 215

Query: 204 IAHPKKEFNGK-PMSEFLGESKI--------NVDTHQVIINGKPYAVSFSDVEGEDWYVG 254
             HP   F+GK  ++E LG            ++ + +   +G+ Y      +   +W + 
Sbjct: 216 QVHPDAAFSGKRQLAEQLGADAAKGVMTGGESLRSSRFSRDGERYLALGLPLRDLNWTLV 275

Query: 255 VVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEG 314
             + E   YA + +    T +      ++S+ +++ + R L++P+  +  A+  + SG G
Sbjct: 276 AEVPESEIYAQMHQAVWLTSLIGGAVALVSLLLVVLLARGLVRPIRRVTAALVQIGSGAG 335

Query: 315 DLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAM 374
           DL+ RL  +  +E   LA GFN F ++ +  + +  +    + R  E  +  +  +AE  
Sbjct: 336 DLSHRLDDSRQDELGDLARGFNRFLDSQRSLIGEVLSTSERLRRAVEQVTQVVDNTAERS 395

Query: 375 RSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLS 434
             Q    E +ATA+HEM  T  D+A NA  AA A++ A D A    +VV ++ + I+ +S
Sbjct: 396 GRQQEMTEMVATAVHEMGLTVQDIARNAGDAAQASQSARDEALQAREVVQRSIRGIEGMS 455

Query: 435 ATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVAD 494
             I  A D V  L    A+++ VL VI  I++QTNLLALNAAIEAARAGE GRGFAVVAD
Sbjct: 456 GDIGKAADAVSQLADEVASVDEVLAVIRSISEQTNLLALNAAIEAARAGEMGRGFAVVAD 515

Query: 495 EVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRL 554
           EVRTLA+RTQ ST E++ MI++L+ GA +   +M   +    S V  +Q    +L  I  
Sbjct: 516 EVRTLARRTQLSTDEVQQMIQRLKLGAGSAVSSMQAGQQATGSGVESSQRTGASLSAITD 575

Query: 555 AIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVA 595
            ++ ISDMN Q+A+A EEQS V EEIN     I DL+ + A
Sbjct: 576 QVEHISDMNHQVATATEEQSAVTEEINRTVQGISDLARETA 616



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 57/320 (17%), Positives = 126/320 (39%), Gaps = 22/320 (6%)

Query: 304 DAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSK-------AIGAEI 356
           DA + V +G   L     +   E +  L +       TL  ++ +S+       A+    
Sbjct: 236 DAAKGVMTGGESLRSSRFSRDGERYLALGLPLRDLNWTLVAEVPESEIYAQMHQAVWLTS 295

Query: 357 LRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAA 416
           L G     ++L       R  +  + ++  A+ ++ + + D+++    +    ++ D A 
Sbjct: 296 LIGGAVALVSLLLVVLLARGLVRPIRRVTAALVQIGSGAGDLSHRLDDSRQD-ELGDLAR 354

Query: 417 AAGTDVVTKTTKAIDTLSAT--IDAAVDDVKVLESATAN--------IETVLKVINDIAD 466
                + ++ +   + LS +  +  AV+ V  +   TA          E V   ++++  
Sbjct: 355 GFNRFLDSQRSLIGEVLSTSERLRRAVEQVTQVVDNTAERSGRQQEMTEMVATAVHEMGL 414

Query: 467 QTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAV 526
               +A NA  +AA+A +S R  A+ A   R + QR+ +    +   I K     + +A 
Sbjct: 415 TVQDIARNAG-DAAQASQSARDEALQA---REVVQRSIRGIEGMSGDIGKAADAVSQLAD 470

Query: 527 AMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVK 586
            ++   +  A   + ++  N       +   +  +M    A  A+E   +A     +T +
Sbjct: 471 EVASVDEVLAVIRSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLARRTQLSTDE 530

Query: 587 IKDLSDQVAESADEANMSMQ 606
           ++ +  ++   A  A  SMQ
Sbjct: 531 VQQMIQRLKLGAGSAVSSMQ 550