Pairwise Alignments

Query, 228 a.a., biopolymer transporter exbB1 from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., MotA/TolQ/ExbB proton channel family protein from Sphingobium sp. HT1-2

 Score = 53.1 bits (126), Expect = 5e-12
 Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 23/193 (11%)

Query: 4   LQQLQQQLGLMAWPLFIC----SALTVMLLAERLFQVLLSLTVGKGAIRHALQATSPKNP 59
           L +  +Q G +AW +FI     S  T  +L  +L +    ++ GK       +A S K  
Sbjct: 18  LMEALEQGGTIAWTVFIILCAMSVGTFYILFTKLIEQQKVISQGKKIRATFWRAASLKEA 77

Query: 60  KQLAELTEHFASKRPVLYRGVAM----------LLAHHQFDKSLREDAAGIWLQEQRHQF 109
              A+L ++ A K+ ++  G+            + AH     SL    A I         
Sbjct: 78  S--AKLEKNSAYKQ-IVDDGIKAQEEHGKLKDPVEAHDWLHGSLARSEAAI-----NSSL 129

Query: 110 NSGLRLLTLIGVISPLLGLLGTVLGLIEMFKGVAATTGSITPNVLADGLGVAMYTTAAGL 169
             GL  L  +G  SP +GL GTV+G+      + A  G  + + +A  +G A+  TA GL
Sbjct: 130 GGGLAFLATVGSTSPFIGLFGTVIGIYRALIKIGAA-GQASIDAVAGPVGEALIMTALGL 188

Query: 170 LIAVPAVAGAQLL 182
            +AVPAV     L
Sbjct: 189 AVAVPAVLAYNFL 201