Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  213 bits (543), Expect = 1e-59
 Identities = 133/376 (35%), Positives = 211/376 (56%), Gaps = 6/376 (1%)

Query: 205 ELETRTAQQFNQAAEQVKSTVLIGNISLVVVAIIAIIGYV-VVNRKIVTPIDRMASVLQR 263
           ++  + A   N+ AE   +      +SL+V+A +  + +  ++ R I  PI   A  L+ 
Sbjct: 168 DINNKMALATNKDAEDQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPI---AQALEA 224

Query: 264 ADD--NSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRSIT 321
           A++    +LT  ++    DE   +   + K+      T+ +I      ++S ++ + ++T
Sbjct: 225 AEEVAEGNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVT 284

Query: 322 DQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEKTI 381
           D++ +  +QQ+ E+E AATA+ EMTSA+  V+++     E + +A   A + + + ++T+
Sbjct: 285 DESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETV 344

Query: 382 REFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQGR 441
                + G+ Q T+ +I  LA ES ++G VLDVI+ +A+QTNLLALNAAIEAARAGE GR
Sbjct: 345 SAIERMSGDVQATATLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGR 404

Query: 442 GFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVANE 501
           GFAVVADEVR+LA RTQ+ST EIE MI  +Q   E +  ++R S ++ +ST      A  
Sbjct: 405 GFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGM 464

Query: 502 SLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVD 561
           SL  I  +  EI++ N  IA+A EEQ  V+ E+  NL  I+ LS +      Q      +
Sbjct: 465 SLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSE 524

Query: 562 LQRNVDDLNSAIAHIR 577
           L R   DLN  +   R
Sbjct: 525 LSRLAVDLNGMVGRFR 540



 Score = 25.8 bits (55), Expect = 0.005
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 501 ESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVV 560
           ++L  I GSA       T +A+A EE   V+DE +  L+       +   A+ ++   V 
Sbjct: 261 DTLQRIAGSA-------TQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVE 313

Query: 561 DLQRNVDDLNSAIAHIRT 578
           ++ RN    + A  +  T
Sbjct: 314 EVARNAVSTSEASRNATT 331