Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  198 bits (504), Expect = 4e-55
 Identities = 132/397 (33%), Positives = 218/397 (54%), Gaps = 4/397 (1%)

Query: 179 AVQLLHSEEYHREKAKIMAPIDRFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVAII 238
           A+++++ E    + A  MA   R    L   +A Q    A+ V S   I  I ++V+  +
Sbjct: 144 AIRVVNGEM--NQLADEMAATLRELVTLNKTSANQAASLAQSVFSQSRIWVIGMIVLTAL 201

Query: 239 AIIGY-VVVNRKIVTPIDRMASVLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYG 297
             IG  V++ R IV P+ +   V Q    + DLT  +     DE A + + +  +  +  
Sbjct: 202 VTIGLAVLLTRSIVLPLAQSLKVAQGVA-SGDLTGEISVCGRDEPARLQQALKSMQENLR 260

Query: 298 STISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTN 357
            TI +I++ ++ ++S S+ +  +T+   +   QQ QE+E AATA+ +MT+A+  V+ +  
Sbjct: 261 DTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEIEQAATAVNQMTAAVEEVASNAV 320

Query: 358 MAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKA 417
              + +  +++ A   ++  ++T+     L  +       ++ LA +   +  VLDVI++
Sbjct: 321 ATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNVTQVEDLAQKVYGISKVLDVIRS 380

Query: 418 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEM 477
           IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR+LA RTQ+ST EIE MIS +Q+  + 
Sbjct: 381 IAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQQSTQEIEQMISGIQQGTDQ 440

Query: 478 STKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSN 537
           +  +++ S  + +ST      A  +L  I  +   I++ N  IA+A+E+Q  V+ E+  N
Sbjct: 441 AVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINERNLVIASASEQQAAVAREVDRN 500

Query: 538 LSTIKTLSGEMNLAIKQLGPVVVDLQRNVDDLNSAIA 574
           L  I+ L+ + +    Q      DL R   DLN+ +A
Sbjct: 501 LMNIRDLAHQTSTGANQTSAASHDLSRLAVDLNTLVA 537