Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  202 bits (513), Expect = 4e-56
 Identities = 130/375 (34%), Positives = 210/375 (56%), Gaps = 2/375 (0%)

Query: 201 RFFQELETRTAQQFNQAAEQVKSTVLIGNISLVVVA-IIAIIGYVVVNRKIVTPIDRMAS 259
           R   E   R  ++   AA++++++ L   IS +V+A +IAII  V++ R I  PI +   
Sbjct: 163 RVMIESNNRQIKEGAVAADELRNSALTWMISGIVLAFLIAIIIGVLITRLITRPIAQAVQ 222

Query: 260 VLQRADDNSDLTLRVEEKSDDELAVIGRTINKVLGSYGSTISKINQVNHTISSISDTIRS 319
             QR     DLT  +  +  DE   +   ++ + G   ST+ +I   +  ++S ++ + +
Sbjct: 223 SAQRIAQG-DLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSA 281

Query: 320 ITDQNMKMSSQQDQELEMAATAMEEMTSALSSVSQSTNMAEEYAGSAEKEANNSKQVFEK 379
           +TD++ +  ++Q+ E++ AATA+ +MT+A+  V+ +     E +  A  EA + +Q  E+
Sbjct: 282 VTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQ 341

Query: 380 TIREFADLDGEFQKTSEIIQQLATESNNVGNVLDVIKAIAEQTNLLALNAAIEAARAGEQ 439
            +   + +  E   +++ +  LA +   +G V+DVI+ IA+QTNLLALNAAIEAARAGEQ
Sbjct: 342 AVSGMSSMVVEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQ 401

Query: 440 GRGFAVVADEVRSLAQRTQESTGEIETMISMLQEKAEMSTKTIRVSADKMQSTRGNMGVA 499
           GRGFAVVADEVR+LA RTQ ST +IE MI  +Q  A+ +   +  S     +T+     A
Sbjct: 402 GRGFAVVADEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNA 461

Query: 500 NESLVAIQGSAKEIHKLNTSIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVV 559
            E+L  I  S  +I++ N  IA+A+EEQ  V+ E+  NL  I+ LS +      Q     
Sbjct: 462 GEALQRITASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASS 521

Query: 560 VDLQRNVDDLNSAIA 574
            DL R     N  ++
Sbjct: 522 QDLSRLATSFNVLVS 536