Pairwise Alignments

Query, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  186 bits (471), Expect = 3e-51
 Identities = 108/315 (34%), Positives = 182/315 (57%), Gaps = 3/315 (0%)

Query: 232 LVVVAIIAIIGYVVVNRKIVTPIDRMASVLQR-ADDNSDLTLRVEEKSDDELAVIGRTIN 290
           + VVAI  ++  ++  + ++ P+  M   +Q  A    DLT R+   S DE   +G   N
Sbjct: 281 IAVVAIAVLLSLLI--QVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFN 338

Query: 291 KVLGSYGSTISKINQVNHTISSISDTIRSITDQNMKMSSQQDQELEMAATAMEEMTSALS 350
           + +    ++IS+++     +  +S  + + ++ ++  S +Q       A A+ E+ +A  
Sbjct: 339 QFVERIHASISEVSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQ 398

Query: 351 SVSQSTNMAEEYAGSAEKEANNSKQVFEKTIREFADLDGEFQKTSEIIQQLATESNNVGN 410
            ++++   A ++A  A ++A++ ++V E+TI   ++L  +   +   I+ L   ++N+G+
Sbjct: 399 EIARNAADASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGH 458

Query: 411 VLDVIKAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQESTGEIETMISM 470
           +LDVIK I++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQES  EI  MI+ 
Sbjct: 459 ILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITS 518

Query: 471 LQEKAEMSTKTIRVSADKMQSTRGNMGVANESLVAIQGSAKEIHKLNTSIAAATEEQLTV 530
           LQ  +  +  T+  S    + +      A E LV++     EI  +N S+AAATEEQ  V
Sbjct: 519 LQVGSREAVTTMNASQTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAV 578

Query: 531 SDEISSNLSTIKTLS 545
            + ++ +++ I  L+
Sbjct: 579 VETLNVDINQINLLN 593



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 19/110 (17%)

Query: 467 MISMLQEKAEMSTKTIRVSADKMQSTRGNMGVA--------NESLVAIQGSAKEIHKLNT 518
           M  + Q + +++ + +  S D+     G +G A        + S+  +  + +++H L+ 
Sbjct: 308 MQDIAQGEGDLTRRLVVTSKDEF----GEVGSAFNQFVERIHASISEVSSATRQVHDLSQ 363

Query: 519 SIAAATEEQLTVSDEISSNLSTIKTLSGEMNLAIKQLGPVVVDLQRNVDD 568
            + A++   +  SDE S+  +++         AI +LG    ++ RN  D
Sbjct: 364 RVMASSNASIIGSDEQSARTNSVAA-------AINELGAATQEIARNAAD 406