Pairwise Alignments

Query, 379 a.a., CdaR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., DNA-binding transcriptional regulator CdaR from Escherichia coli ECOR38

 Score =  280 bits (715), Expect = 6e-80
 Identities = 152/376 (40%), Positives = 232/376 (61%), Gaps = 3/376 (0%)

Query: 3   LDSQLAQQIVDRTMAIIGYNINVMNQAGVIIGSGEKNRIGQVHDGAILALKHGDSVELTA 62
           LD+++AQ IV RTM II  NINVM+  G IIGSG++ RIG++H+GA+L L  G  V++  
Sbjct: 6   LDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDD 65

Query: 63  ESCVALKGVKPGINMVLRNQQQVVGIVGITGEPKDIRDFANLVKMSAEMIIEQAALVEQL 122
                L GV+ GIN+ LR + ++VG++G+TGEP+++R +  LV M+AEM++EQ+ L+  L
Sbjct: 66  AVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMHLL 125

Query: 123 QWDRRHREEFISAWIHNTLSAAELDAWAARLSIDLSKPRVAVVIAFRQPKSG--QSLDQI 180
             D R REE +   I    +   L  WA RL IDL++PRV  ++     + G   ++ ++
Sbjct: 126 AQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAEL 185

Query: 181 RQVVELLEHPERDNLVAVVSMQEIVVLKPC-RTPEHWTSEYESLRIDKLMARLKAYDITG 239
           +Q+   L  PER+NLVA+VS+ E+VVLKP   +   W +E    R+++L+ R+K Y    
Sbjct: 186 QQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLITRMKEYGQLR 245

Query: 240 YDIALGQLFINPNAIHLSYQSAKQVLRIGQVRQPEKQKHLYEELRLPVLLLPLNEGWQGE 299
           + ++LG  F  P +I  SY++AK  + +G+ R PE + + Y++L LPVLL  L   WQ  
Sbjct: 246 FRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVLLDSLRGDWQAN 305

Query: 300 QWRRVMQELQTQDKSGQLVKTLKGLFAANGNLNLCAQQLFIHRNTLRYRLEKITEITGIE 359
           +  R +  L+  D +G L +TL   F  N      ++ LFIHRNTL YRL +I+E+TG++
Sbjct: 306 ELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLD 365

Query: 360 TNSLLGLAELYIAYQL 375
             +      LY+A QL
Sbjct: 366 LGNFDDRLLLYVALQL 381