Pairwise Alignments

Query, 450 a.a., permease from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., putative transporter from Escherichia coli BL21

 Score =  214 bits (546), Expect = 4e-60
 Identities = 142/461 (30%), Positives = 246/461 (53%), Gaps = 22/461 (4%)

Query: 1   MSLILILLAVIVFIVLATTKFKVHPFLALLLAAFLGAFAYGLPADTIAKTITTGFGGILG 60
           ++L+ I L  ++ ++L   K KV PF+ALLL + L A A G+PA  + K +  G GG+LG
Sbjct: 4   ITLLCIALTGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLG 63

Query: 61  YIGLVIVLGTIIGVILEKSGAAITMADTVIKLLGERFPTLTMSIIGYIVSIPVFCDSGFV 120
            + ++I LG ++G ++E SG A ++A+   + LG++     +++  + + IPVF D GF+
Sbjct: 64  SVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDVGFI 123

Query: 121 ILNSLKESLAKRLATSSVAMSVALATGLYATHTFVPPTPGPIAAAGNLGLESQLGLVIAI 180
           IL  +    AK    S +   + +A  +   H  VPP PGP+AAAG   L + +G +  I
Sbjct: 124 ILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGL--LHADIGWLTII 181

Query: 181 GLFVAAVAAIAGMLWA----NRFQAVEADIIDS-QESPKKDWQALKASYG-QLPSASQAF 234
           G+ ++    + G   A     R  A+  ++++  Q +P  +  A K S     P  +   
Sbjct: 182 GIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALVT 241

Query: 235 APIFVPILLICFGSIAKF---PSFPFGQGMLFEVLGFLGQPLTALLIGLLLAVRL--LKS 289
           + I +PI +I  G+++     PS P     L   L  +G P+ AL+I L+LA  L  L+ 
Sbjct: 242 SLIVIPIAIIMAGTVSATLMPPSHP-----LLGTLQLIGSPMVALMIALVLAFWLLALRR 296

Query: 290 ADKVAEFGERISQGITAAAPILLITGAGGAFGAVLKATPLGDYLGTTLSALGVGIF-MPF 348
              +    + +   +  AA ++L+TGAGG FG VL  + +G  L   L  + + +    F
Sbjct: 297 GWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAF 356

Query: 349 IVAAALKSAQGSSTVALVTTSALVAPLLGQLGLDSEMGRALTVMAIGAGAMTVSHANDSF 408
           I++ AL+++QGS+TVA++TT  L++  +  +GL + +   L  +A   G +  SH NDS 
Sbjct: 357 IISLALRASQGSATVAILTTGGLLSEAV--MGL-NPIQCVLVTLAACFGGLGASHINDSG 413

Query: 409 FWVVSQFSRMSVGLAYRAQTMATLVQGGTAMAVVYVLSLVL 449
           FW+V+++  +SV    +  T+ T + G T   + + +  V+
Sbjct: 414 FWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI 454