Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Cytochrome bd-I ubiquinol oxidase subunit 2 from Xanthobacter sp. DMC5

 Score =  135 bits (340), Expect = 2e-36
 Identities = 105/367 (28%), Positives = 176/367 (47%), Gaps = 52/367 (14%)

Query: 7   LRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGNQVWLIT 66
           L +IW  +IG  +I +++ DGFD+G+G L P   + E ++ VM+N++AP WDGN+ WLI 
Sbjct: 5   LPVIWGLIIGVAVIMYVVLDGFDLGIGILFPF-AKEEKERDVMMNTVAPFWDGNETWLIL 63

Query: 67  AGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICDISISLS 126
            GG L+ A+P  YA    +LY+ + ++LLAL  R +A E+R      S R++ + + S  
Sbjct: 64  GGGGLWVAFPKAYAVVMPALYLPVIIMLLALVFRGVAFEFRWV--AASSRRLWNFAFSAG 121

Query: 127 GLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSG-GIGVLMALVQGS 185
            L+     G+  G L+QG+     A     + G  +D  TPF++L G G+ V  AL+ G+
Sbjct: 122 SLVAAFFQGIILGGLVQGITVKDGA-----FAGGPLDWATPFALLCGVGVVVGYALL-GA 175

Query: 186 AWLTLKTSDILHKKAR---LTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAISNP 242
            WL +KT  ++  +AR   +   ++V+ L GL  +              + L ++ I   
Sbjct: 176 TWLLVKTEGVIADRARSHAIPLLLAVVVLMGLVSLW-------------TPLAFDRI--- 219

Query: 243 LNKVVFQQAGAWLTNFERYPWMWFAPM----GGLMMAMGVFLSAKWKNDAITFVCASVTN 298
                   A  W   F R    + AP+     GL   +  +L  K   + + F       
Sbjct: 220 --------ATRW---FSRPNIFFLAPVPIITAGLTYLVWHWL--KTGREMLPFFGTIGLF 266

Query: 299 ACIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSY 358
               L    + FP+++P       SLT+W   ++  +  +M      +LP++L Y  F Y
Sbjct: 267 VLGFLGLAISTFPYLVPP------SLTVWQTAAAPPSQILMLFGVIFLLPVVLGYIVFVY 320

Query: 359 RTMFGRL 365
               G++
Sbjct: 321 WIFRGKV 327